miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27694 3' -53.3 NC_005882.1 + 8671 0.66 0.674275
Target:  5'- -cGAuaAGUCGAagcaUCGUCUGCcCGACAGc -3'
miRNA:   3'- aaCU--UCAGCUa---AGCGGACGcGCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 26592 0.66 0.674275
Target:  5'- ---uGGUCGAUgguauucagCGCCUGCGCG-Cu- -3'
miRNA:   3'- aacuUCAGCUAa--------GCGGACGCGCuGuu -5'
27694 3' -53.3 NC_005882.1 + 26328 0.66 0.662583
Target:  5'- -aGAAGUUca-UCGCUUcGCGCGGCGAc -3'
miRNA:   3'- aaCUUCAGcuaAGCGGA-CGCGCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 18279 0.66 0.648511
Target:  5'- -cGAAGuuguccUCGGUgaccagcaccagCGCCUGCGCGAUc- -3'
miRNA:   3'- aaCUUC------AGCUAa-----------GCGGACGCGCUGuu -5'
27694 3' -53.3 NC_005882.1 + 19385 0.66 0.639115
Target:  5'- --cGAGUCGAUcCGCgaagucGCGCGACAAg -3'
miRNA:   3'- aacUUCAGCUAaGCGga----CGCGCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 4529 0.67 0.592186
Target:  5'- -cGAGGUCGucgaGgCUGCGCGGCc- -3'
miRNA:   3'- aaCUUCAGCuaagCgGACGCGCUGuu -5'
27694 3' -53.3 NC_005882.1 + 16452 0.67 0.580523
Target:  5'- -aGAAGUaCGGUUCGCCgaUGCugguCGGCAAg -3'
miRNA:   3'- aaCUUCA-GCUAAGCGG--ACGc---GCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 21801 0.67 0.579359
Target:  5'- cUUGAaauGGUCGAUgccaucgUCGCCcggcUGCGCGuCAAg -3'
miRNA:   3'- -AACU---UCAGCUA-------AGCGG----ACGCGCuGUU- -5'
27694 3' -53.3 NC_005882.1 + 22948 0.67 0.557351
Target:  5'- ------aCGAUUCGCCggGUGCGACGg -3'
miRNA:   3'- aacuucaGCUAAGCGGa-CGCGCUGUu -5'
27694 3' -53.3 NC_005882.1 + 25703 0.68 0.511894
Target:  5'- -cGAAGcCG----GCCUGCGCGACAu -3'
miRNA:   3'- aaCUUCaGCuaagCGGACGCGCUGUu -5'
27694 3' -53.3 NC_005882.1 + 26273 0.69 0.436457
Target:  5'- -aGgcGUCGAUggUCGCCuucgcguucaUGUGCGACAGc -3'
miRNA:   3'- aaCuuCAGCUA--AGCGG----------ACGCGCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 2121 0.72 0.323552
Target:  5'- cUUGucGGUCGcaaaCGCCUGCGUGACGAu -3'
miRNA:   3'- -AACu-UCAGCuaa-GCGGACGCGCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 4903 0.73 0.28337
Target:  5'- -cGAGGUCGuGUUCcguGCCgcgGCGCGGCAGg -3'
miRNA:   3'- aaCUUCAGC-UAAG---CGGa--CGCGCUGUU- -5'
27694 3' -53.3 NC_005882.1 + 29562 1.04 0.001657
Target:  5'- cUUGAAGUCGAUUCGCCUGCGCGACAAg -3'
miRNA:   3'- -AACUUCAGCUAAGCGGACGCGCUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.