miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27694 5' -58.4 NC_005882.1 + 25765 0.66 0.407047
Target:  5'- aUCgcgauguCGCGCAGGCCGgcuucgaAGGUggCGGCc- -3'
miRNA:   3'- cAGau-----GCGCGUCCGGU-------UCCA--GCCGau -5'
27694 5' -58.4 NC_005882.1 + 30526 0.66 0.398542
Target:  5'- -gCUGCGCGC-GGCCGacaAGGUgaCGGUc- -3'
miRNA:   3'- caGAUGCGCGuCCGGU---UCCA--GCCGau -5'
27694 5' -58.4 NC_005882.1 + 17104 0.66 0.398542
Target:  5'- ---gACGCGCAGGCgcuGGUCGcGCc- -3'
miRNA:   3'- cagaUGCGCGUCCGguuCCAGC-CGau -5'
27694 5' -58.4 NC_005882.1 + 4505 0.66 0.389226
Target:  5'- aGUCgagaauuCGCucccGCAGGUCGAGGUCgucgaGGCUGc -3'
miRNA:   3'- -CAGau-----GCG----CGUCCGGUUCCAG-----CCGAU- -5'
27694 5' -58.4 NC_005882.1 + 26880 0.66 0.380055
Target:  5'- uGUUUcGCGCGCucuGGGCCGGuGG-CGGCUc -3'
miRNA:   3'- -CAGA-UGCGCG---UCCGGUU-CCaGCCGAu -5'
27694 5' -58.4 NC_005882.1 + 27600 0.66 0.371028
Target:  5'- ---gGCGaCGCAGGCCGcGGccgCGGCg- -3'
miRNA:   3'- cagaUGC-GCGUCCGGUuCCa--GCCGau -5'
27694 5' -58.4 NC_005882.1 + 22486 0.66 0.359515
Target:  5'- gGUCUuccggcacgcugggGCGCGCGGGCUu-GGUCGacggcGCUGc -3'
miRNA:   3'- -CAGA--------------UGCGCGUCCGGuuCCAGC-----CGAU- -5'
27694 5' -58.4 NC_005882.1 + 15648 0.67 0.344839
Target:  5'- ---gGCGCGCAGGUCcgcGAGcacGUCGGCa- -3'
miRNA:   3'- cagaUGCGCGUCCGG---UUC---CAGCCGau -5'
27694 5' -58.4 NC_005882.1 + 6659 0.68 0.304208
Target:  5'- cGUCUcgGCGUGCuGcGCCAAGGUuucgaaggCGGCa- -3'
miRNA:   3'- -CAGA--UGCGCGuC-CGGUUCCA--------GCCGau -5'
27694 5' -58.4 NC_005882.1 + 1197 0.68 0.289016
Target:  5'- aUCUGauCGCGGGCCucAGGcUCGGCa- -3'
miRNA:   3'- cAGAUgcGCGUCCGGu-UCC-AGCCGau -5'
27694 5' -58.4 NC_005882.1 + 19548 0.69 0.24054
Target:  5'- cUCgccgACGCGCAGGCgcgugagcgCAAGG-CGGCg- -3'
miRNA:   3'- cAGa---UGCGCGUCCG---------GUUCCaGCCGau -5'
27694 5' -58.4 NC_005882.1 + 19270 0.71 0.183245
Target:  5'- ----uCGCGCAGGCCcuuGAGGgccggCGGCUGc -3'
miRNA:   3'- cagauGCGCGUCCGG---UUCCa----GCCGAU- -5'
27694 5' -58.4 NC_005882.1 + 5915 0.75 0.086837
Target:  5'- aUC-ACGCGCAGGCCGuucgcacGGGcaUCGGCUAc -3'
miRNA:   3'- cAGaUGCGCGUCCGGU-------UCC--AGCCGAU- -5'
27694 5' -58.4 NC_005882.1 + 29598 1.06 0.000363
Target:  5'- cGUCUACGCGCAGGCCAAGGUCGGCUAc -3'
miRNA:   3'- -CAGAUGCGCGUCCGGUUCCAGCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.