Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
27695 | 3' | -53.9 | NC_005882.1 | + | 15734 | 0.67 | 0.604891 |
Target: 5'- aCGGCGGCgucGCCGuggcgcuuGCCGucGUCcuGGCc -3' miRNA: 3'- -GCCGCCGa--UGGUu-------UGGCuuCAGc-UCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 20358 | 0.67 | 0.615095 |
Target: 5'- aCGGCGGCUuguuCCAGggggaacGCCGAuuccuGGUCuucGCg -3' miRNA: 3'- -GCCGCCGAu---GGUU-------UGGCU-----UCAGcu-CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 3364 | 0.67 | 0.616229 |
Target: 5'- gCGGCcugGGCUACCGcgugcuGGCCGAAGagaucUCGccGCg -3' miRNA: 3'- -GCCG---CCGAUGGU------UUGGCUUC-----AGCu-CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 36443 | 0.67 | 0.627582 |
Target: 5'- aGGCuaucucauGGCUuacaacGCCAGACUGcgagauucGGUCGAGCc -3' miRNA: 3'- gCCG--------CCGA------UGGUUUGGCu-------UCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 1922 | 0.67 | 0.627582 |
Target: 5'- -cGCGGUUACgCGuuGgCGAuGUCGAGCg -3' miRNA: 3'- gcCGCCGAUG-GUu-UgGCUuCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 23121 | 0.66 | 0.684189 |
Target: 5'- cCGGCGuaCUGCacgcaGAACuCGGucucGGUCGAGCu -3' miRNA: 3'- -GCCGCc-GAUGg----UUUG-GCU----UCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 22715 | 0.66 | 0.666148 |
Target: 5'- cCGGCGaGCUG-CGGGCCGAAcugcgccgcgucgacGUCGgacAGCg -3' miRNA: 3'- -GCCGC-CGAUgGUUUGGCUU---------------CAGC---UCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 5667 | 0.66 | 0.695398 |
Target: 5'- aCGcCGuGUUcGCCGAuCCGgcGUCGAGCa -3' miRNA: 3'- -GCcGC-CGA-UGGUUuGGCuuCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 11967 | 0.66 | 0.695398 |
Target: 5'- aGGCgcuGGCUACCGcGCCGAGcuGaCGcGCa -3' miRNA: 3'- gCCG---CCGAUGGUuUGGCUU--CaGCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 21231 | 0.66 | 0.706542 |
Target: 5'- gCGGcCGGCcaaGCCAuuCCGAAGgcaacCGGcGCa -3' miRNA: 3'- -GCC-GCCGa--UGGUuuGGCUUCa----GCU-CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 29047 | 0.66 | 0.714298 |
Target: 5'- uCGGUGGCguaUACCGAcuucuugucagGCCaguccgacgagaucGAGGUCGuGCu -3' miRNA: 3'- -GCCGCCG---AUGGUU-----------UGG--------------CUUCAGCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 29615 | 0.66 | 0.716506 |
Target: 5'- aGGuCGGCUACCAcaacCCGAAaacgaagaagcucGUCGucuacGGCg -3' miRNA: 3'- gCC-GCCGAUGGUuu--GGCUU-------------CAGC-----UCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 8066 | 0.66 | 0.717609 |
Target: 5'- uCGuCuGCauugGCCGAGCCagcguaGAAGUCGAGCa -3' miRNA: 3'- -GCcGcCGa---UGGUUUGG------CUUCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 19038 | 0.66 | 0.717609 |
Target: 5'- uCGGcCGGCaACCugcAGGCCGAacccacccaGGUCGAucccGCa -3' miRNA: 3'- -GCC-GCCGaUGG---UUUGGCU---------UCAGCU----CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 13778 | 0.66 | 0.717609 |
Target: 5'- gCGGCGuGCaacGCCu-GCCGAAGgcCGuGCg -3' miRNA: 3'- -GCCGC-CGa--UGGuuUGGCUUCa-GCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 6663 | 0.66 | 0.684189 |
Target: 5'- uCGGCGuGCUgcGCCAAGguuUCGAAGgCG-GCa -3' miRNA: 3'- -GCCGC-CGA--UGGUUU---GGCUUCaGCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 17808 | 0.66 | 0.672926 |
Target: 5'- aCGGCuggGGCUGCCGGuGCCGcguGGUgGcGCu -3' miRNA: 3'- -GCCG---CCGAUGGUU-UGGCu--UCAgCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 35389 | 0.66 | 0.672926 |
Target: 5'- uGGCaGGcCUACCgGAGCCGAucgaaGGGCa -3' miRNA: 3'- gCCG-CC-GAUGG-UUUGGCUucag-CUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 19711 | 0.66 | 0.672926 |
Target: 5'- uCGGCgaaGGCgaUGCCAAgcaGCCGcuGgCGAGCg -3' miRNA: 3'- -GCCG---CCG--AUGGUU---UGGCuuCaGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 34527 | 0.66 | 0.717609 |
Target: 5'- aCGGCccGCUGCaCAAacGCCGucGUugCGAGCu -3' miRNA: 3'- -GCCGc-CGAUG-GUU--UGGCuuCA--GCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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