Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27695 | 3' | -53.9 | NC_005882.1 | + | 29615 | 0.66 | 0.716506 |
Target: 5'- aGGuCGGCUACCAcaacCCGAAaacgaagaagcucGUCGucuacGGCg -3' miRNA: 3'- gCC-GCCGAUGGUuu--GGCUU-------------CAGC-----UCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 13778 | 0.66 | 0.717609 |
Target: 5'- gCGGCGuGCaacGCCu-GCCGAAGgcCGuGCg -3' miRNA: 3'- -GCCGC-CGa--UGGuuUGGCUUCa-GCuCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 8066 | 0.66 | 0.717609 |
Target: 5'- uCGuCuGCauugGCCGAGCCagcguaGAAGUCGAGCa -3' miRNA: 3'- -GCcGcCGa---UGGUUUGG------CUUCAGCUCG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 19038 | 0.66 | 0.717609 |
Target: 5'- uCGGcCGGCaACCugcAGGCCGAacccacccaGGUCGAucccGCa -3' miRNA: 3'- -GCC-GCCGaUGG---UUUGGCU---------UCAGCU----CG- -5' |
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27695 | 3' | -53.9 | NC_005882.1 | + | 34527 | 0.66 | 0.717609 |
Target: 5'- aCGGCccGCUGCaCAAacGCCGucGUugCGAGCu -3' miRNA: 3'- -GCCGc-CGAUG-GUU--UGGCuuCA--GCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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