miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 7617 0.72 0.366504
Target:  5'- cCGGCcuGGagugcGCCGAGCaCGAAGUCGcAGCa -3'
miRNA:   3'- -GCCG--CCga---UGGUUUG-GCUUCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 13079 0.66 0.695398
Target:  5'- -cGCGGCUGCgGcGGCUGgcGUCGAcGUg -3'
miRNA:   3'- gcCGCCGAUGgU-UUGGCuuCAGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 36443 0.67 0.627582
Target:  5'- aGGCuaucucauGGCUuacaacGCCAGACUGcgagauucGGUCGAGCc -3'
miRNA:   3'- gCCG--------CCGA------UGGUUUGGCu-------UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 18089 0.72 0.366504
Target:  5'- aGGUcaGGCUGCCAcgccgcggcACCGggGUUGuAGCu -3'
miRNA:   3'- gCCG--CCGAUGGUu--------UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 10769 0.73 0.299946
Target:  5'- cCGGCGGUUGugAuACCGGA-UCGAGCg -3'
miRNA:   3'- -GCCGCCGAUggUuUGGCUUcAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 25734 0.76 0.212358
Target:  5'- uGGCGGcCUGCCGAacagcGCCGAuuaCGGGCg -3'
miRNA:   3'- gCCGCC-GAUGGUU-----UGGCUucaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 12598 0.73 0.299946
Target:  5'- uCGGCGGCUAUCAcGCCGGugcgcuugccGG-CGAcGCg -3'
miRNA:   3'- -GCCGCCGAUGGUuUGGCU----------UCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 21187 0.76 0.206621
Target:  5'- uGGcCGGCgcACCGGucgacgagcauGCCGAGGUCGAGUc -3'
miRNA:   3'- gCC-GCCGa-UGGUU-----------UGGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 6663 0.66 0.684189
Target:  5'- uCGGCGuGCUgcGCCAAGguuUCGAAGgCG-GCa -3'
miRNA:   3'- -GCCGC-CGA--UGGUUU---GGCUUCaGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 17808 0.66 0.672926
Target:  5'- aCGGCuggGGCUGCCGGuGCCGcguGGUgGcGCu -3'
miRNA:   3'- -GCCG---CCGAUGGUU-UGGCu--UCAgCuCG- -5'
27695 3' -53.9 NC_005882.1 + 19576 0.69 0.537716
Target:  5'- aGGCGGCggacgACC--GCCGccacAG-CGAGCa -3'
miRNA:   3'- gCCGCCGa----UGGuuUGGCu---UCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 11751 0.69 0.525651
Target:  5'- uGGCGGCauggACCGGAcggacugacgcCCGAAGccgacuaUCGAGUc -3'
miRNA:   3'- gCCGCCGa---UGGUUU-----------GGCUUC-------AGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 30613 0.69 0.515857
Target:  5'- gGGCGGCaugGCCGGAUCGGgcGG-CGAugGCg -3'
miRNA:   3'- gCCGCCGa--UGGUUUGGCU--UCaGCU--CG- -5'
27695 3' -53.9 NC_005882.1 + 27726 0.7 0.442557
Target:  5'- gGGCGGCUcACCGGACgGcgucaaggaucAGGUCaAGCa -3'
miRNA:   3'- gCCGCCGA-UGGUUUGgC-----------UUCAGcUCG- -5'
27695 3' -53.9 NC_005882.1 + 31022 0.73 0.292315
Target:  5'- cCGGUGGgaGCCGcGCugCGAGGUCGuGCg -3'
miRNA:   3'- -GCCGCCgaUGGUuUG--GCUUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 31389 0.67 0.65029
Target:  5'- -cGCGGCUGCCGgcgcAGCCcgcGAAGaCGAcGCu -3'
miRNA:   3'- gcCGCCGAUGGU----UUGG---CUUCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 33090 0.67 0.65029
Target:  5'- gCGGCaaGGCuUGCCGAACU--GGUCG-GCc -3'
miRNA:   3'- -GCCG--CCG-AUGGUUUGGcuUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 13884 0.66 0.672926
Target:  5'- ---gGGCUACCAGAUCaGcAAGUCG-GCg -3'
miRNA:   3'- gccgCCGAUGGUUUGG-C-UUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 19711 0.66 0.672926
Target:  5'- uCGGCgaaGGCgaUGCCAAgcaGCCGcuGgCGAGCg -3'
miRNA:   3'- -GCCG---CCG--AUGGUU---UGGCuuCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 35389 0.66 0.672926
Target:  5'- uGGCaGGcCUACCgGAGCCGAucgaaGGGCa -3'
miRNA:   3'- gCCG-CC-GAUGG-UUUGGCUucag-CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.