miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27695 3' -53.9 NC_005882.1 + 31389 0.67 0.65029
Target:  5'- -cGCGGCUGCCGgcgcAGCCcgcGAAGaCGAcGCu -3'
miRNA:   3'- gcCGCCGAUGGU----UUGG---CUUCaGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 33090 0.67 0.65029
Target:  5'- gCGGCaaGGCuUGCCGAACU--GGUCG-GCc -3'
miRNA:   3'- -GCCG--CCG-AUGGUUUGGcuUCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 36443 0.67 0.627582
Target:  5'- aGGCuaucucauGGCUuacaacGCCAGACUGcgagauucGGUCGAGCc -3'
miRNA:   3'- gCCG--------CCGA------UGGUUUGGCu-------UCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 1922 0.67 0.627582
Target:  5'- -cGCGGUUACgCGuuGgCGAuGUCGAGCg -3'
miRNA:   3'- gcCGCCGAUG-GUu-UgGCUuCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 3364 0.67 0.616229
Target:  5'- gCGGCcugGGCUACCGcgugcuGGCCGAAGagaucUCGccGCg -3'
miRNA:   3'- -GCCG---CCGAUGGU------UUGGCUUC-----AGCu-CG- -5'
27695 3' -53.9 NC_005882.1 + 20358 0.67 0.615095
Target:  5'- aCGGCGGCUuguuCCAGggggaacGCCGAuuccuGGUCuucGCg -3'
miRNA:   3'- -GCCGCCGAu---GGUU-------UGGCU-----UCAGcu-CG- -5'
27695 3' -53.9 NC_005882.1 + 14748 0.67 0.609424
Target:  5'- uCGGCGaGCUGCuCAAggccgcgauggcgcuGCUGAuGUgGGGCg -3'
miRNA:   3'- -GCCGC-CGAUG-GUU---------------UGGCUuCAgCUCG- -5'
27695 3' -53.9 NC_005882.1 + 15734 0.67 0.604891
Target:  5'- aCGGCGGCgucGCCGuggcgcuuGCCGucGUCcuGGCc -3'
miRNA:   3'- -GCCGCCGa--UGGUu-------UGGCuuCAGc-UCG- -5'
27695 3' -53.9 NC_005882.1 + 18502 0.68 0.5981
Target:  5'- gCGGCGuauuccuuguuGCUGCCGAugacgGCCGAAuugucgucgugauccGUCGAGa -3'
miRNA:   3'- -GCCGC-----------CGAUGGUU-----UGGCUU---------------CAGCUCg -5'
27695 3' -53.9 NC_005882.1 + 31971 0.68 0.571066
Target:  5'- uCGGCGGCcGCU-GACCGAuuacGUCGAcGUc -3'
miRNA:   3'- -GCCGCCGaUGGuUUGGCUu---CAGCU-CG- -5'
27695 3' -53.9 NC_005882.1 + 4898 0.68 0.571066
Target:  5'- aGGCGGCaaagcagAUCAAgGCCGcuGUCGaAGCu -3'
miRNA:   3'- gCCGCCGa------UGGUU-UGGCuuCAGC-UCG- -5'
27695 3' -53.9 NC_005882.1 + 24090 0.68 0.571066
Target:  5'- gGGCGGCcuggaCAAGCuCGAAGgCGAGa -3'
miRNA:   3'- gCCGCCGaug--GUUUG-GCUUCaGCUCg -5'
27695 3' -53.9 NC_005882.1 + 17123 0.68 0.559885
Target:  5'- gCGGacaaGGUguUCAGugCGgcGUCGAGCg -3'
miRNA:   3'- -GCCg---CCGauGGUUugGCuuCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 32569 0.68 0.559885
Target:  5'- uCGGCGcCUagGCUuuGgCGAAGUUGAGCu -3'
miRNA:   3'- -GCCGCcGA--UGGuuUgGCUUCAGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 21115 0.68 0.55877
Target:  5'- uCGGC-GUUGCCGAaacgaccGCCGAuGUCG-GCg -3'
miRNA:   3'- -GCCGcCGAUGGUU-------UGGCUuCAGCuCG- -5'
27695 3' -53.9 NC_005882.1 + 1120 0.68 0.556542
Target:  5'- aGGCGGaugagcuuUUGCCGAGCCuGAGGcccgcgaucagauuUCGAGUa -3'
miRNA:   3'- gCCGCC--------GAUGGUUUGG-CUUC--------------AGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 19576 0.69 0.537716
Target:  5'- aGGCGGCggacgACC--GCCGccacAG-CGAGCa -3'
miRNA:   3'- gCCGCCGa----UGGuuUGGCu---UCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 26286 0.69 0.537716
Target:  5'- cCGGCGGCUAUuCGAGCuaCGAAGgcUCGcuGCa -3'
miRNA:   3'- -GCCGCCGAUG-GUUUG--GCUUC--AGCu-CG- -5'
27695 3' -53.9 NC_005882.1 + 27632 0.69 0.537716
Target:  5'- cCGGCGGCcGCgCGcgcggcGACCGccGaCGAGCg -3'
miRNA:   3'- -GCCGCCGaUG-GU------UUGGCuuCaGCUCG- -5'
27695 3' -53.9 NC_005882.1 + 11751 0.69 0.525651
Target:  5'- uGGCGGCauggACCGGAcggacugacgcCCGAAGccgacuaUCGAGUc -3'
miRNA:   3'- gCCGCCGa---UGGUUU-----------GGCUUC-------AGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.