Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27695 | 5' | -59.5 | NC_005882.1 | + | 5671 | 0.68 | 0.317323 |
Target: 5'- cGUGUUCGCCGaUCCGGcGUCGaGCAu--- -3' miRNA: 3'- -CGCGAGCGGC-AGGUC-CGGC-CGUuucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 4698 | 0.67 | 0.357863 |
Target: 5'- aGCGgUUGCUGUUgacccgcucgCGGGCCGGUAAGc- -3' miRNA: 3'- -CGCgAGCGGCAG----------GUCCGGCCGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25772 | 0.67 | 0.357863 |
Target: 5'- uGCGguaaUCGCgaUGUCgcgCAGGCCGGCuucGAAGGu -3' miRNA: 3'- -CGCg---AGCG--GCAG---GUCCGGCCG---UUUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 19269 | 0.67 | 0.333113 |
Target: 5'- cGCGCagGCCcUUgaGGGCCGGCGgcugcgcaccGAGGa -3' miRNA: 3'- -CGCGagCGGcAGg-UCCGGCCGU----------UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25168 | 0.67 | 0.333113 |
Target: 5'- cGgGC-CgGCCGUCguGGCCGGCu---- -3' miRNA: 3'- -CgCGaG-CGGCAGguCCGGCCGuuucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 15015 | 0.67 | 0.365535 |
Target: 5'- -gGCUUcaccuucgGCCGUCCAGGCUucgcccuugcgcaGGCAAAu- -3' miRNA: 3'- cgCGAG--------CGGCAGGUCCGG-------------CCGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 13132 | 0.67 | 0.366394 |
Target: 5'- aUGCUCGCgacguucauCGgccuucugaUCgGGGCCGGCAAGGu -3' miRNA: 3'- cGCGAGCG---------GC---------AGgUCCGGCCGUUUCc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 21349 | 0.67 | 0.333113 |
Target: 5'- aCGCUCGCCGaCCugaagcuGGCCGuGCc--GGa -3' miRNA: 3'- cGCGAGCGGCaGGu------CCGGC-CGuuuCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 12215 | 0.66 | 0.401896 |
Target: 5'- uGCGcCUCGCCcagCUcGGCCGGau-AGGc -3' miRNA: 3'- -CGC-GAGCGGca-GGuCCGGCCguuUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 4918 | 0.66 | 0.375065 |
Target: 5'- cGCGCcgcucUCGCUGaUCgAGGC-GGCAAAGc -3' miRNA: 3'- -CGCG-----AGCGGC-AGgUCCGgCCGUUUCc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 25258 | 0.66 | 0.392818 |
Target: 5'- cGUGCUCGCCGUCU-GGCUGuuCAucGa -3' miRNA: 3'- -CGCGAGCGGCAGGuCCGGCc-GUuuCc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 26064 | 0.66 | 0.411107 |
Target: 5'- -aGCUUGCCG-CCguAGGCCGcGCGGu-- -3' miRNA: 3'- cgCGAGCGGCaGG--UCCGGC-CGUUucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 21248 | 0.66 | 0.375065 |
Target: 5'- aUGCUCGUCGaCCGGugcGCCGGCcaugaccAGGa -3' miRNA: 3'- cGCGAGCGGCaGGUC---CGGCCGuu-----UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 6936 | 0.66 | 0.401896 |
Target: 5'- -aGCUCGCCGguuuGGCCGGuCAGc-- -3' miRNA: 3'- cgCGAGCGGCagguCCGGCC-GUUucc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 14335 | 0.66 | 0.383873 |
Target: 5'- uGCGCcCGCCGUCCugcuGCCGuaucaGCAGAa- -3' miRNA: 3'- -CGCGaGCGGCAGGuc--CGGC-----CGUUUcc -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 9335 | 0.66 | 0.392818 |
Target: 5'- aGCGUUCGCCGgacgCCAGcuaccuCgCGGCAAucaugcgugucGGGg -3' miRNA: 3'- -CGCGAGCGGCa---GGUCc-----G-GCCGUU-----------UCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 29753 | 0.66 | 0.401896 |
Target: 5'- uGCgGCUUuCCG-CaCGGGCCGGCuccAAGGc -3' miRNA: 3'- -CG-CGAGcGGCaG-GUCCGGCCGu--UUCC- -5' |
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27695 | 5' | -59.5 | NC_005882.1 | + | 27867 | 0.66 | 0.414828 |
Target: 5'- gGCGCUCGCgcuucgcgagcagguCGucgagcaugcgcUCCAGGUCGcGCAAcgacAGGu -3' miRNA: 3'- -CGCGAGCG---------------GC------------AGGUCCGGC-CGUU----UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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