miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27696 3' -55.2 NC_005882.1 + 29424 0.67 0.584917
Target:  5'- gGAGcaggACGuagCGUuccugacGCGGCUCGCGCGCg -3'
miRNA:   3'- gCUCa---UGCua-GCG-------CGCUGGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 32949 0.67 0.573868
Target:  5'- gGGGUuucgaacaagcagGCGAagcagcUCG-GCGGCCgCACGCGCu -3'
miRNA:   3'- gCUCA-------------UGCU------AGCgCGCUGG-GUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 11999 0.67 0.563966
Target:  5'- gCGGGcAC--UUGCGCGGCCaCGgGCGCg -3'
miRNA:   3'- -GCUCaUGcuAGCGCGCUGG-GUgUGCG- -5'
27696 3' -55.2 NC_005882.1 + 25993 0.67 0.563966
Target:  5'- gGAG-GCGuucaacCGCGCGGCCUACG-GCg -3'
miRNA:   3'- gCUCaUGCua----GCGCGCUGGGUGUgCG- -5'
27696 3' -55.2 NC_005882.1 + 17031 0.67 0.563966
Target:  5'- aGAGUuCGAagCGCcCGACCaggACGCGCu -3'
miRNA:   3'- gCUCAuGCUa-GCGcGCUGGg--UGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 21154 0.67 0.553018
Target:  5'- cCGAGcGCcuUCGCGcCGGCUgcgCACACGCc -3'
miRNA:   3'- -GCUCaUGcuAGCGC-GCUGG---GUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 16695 0.68 0.542134
Target:  5'- cCGAGgcgACGucgacgCGCGCGuCCgCGCAgGCc -3'
miRNA:   3'- -GCUCa--UGCua----GCGCGCuGG-GUGUgCG- -5'
27696 3' -55.2 NC_005882.1 + 8105 0.68 0.542134
Target:  5'- aCGAa-ACGAUCGCGaCGAUCCAgCAaGCa -3'
miRNA:   3'- -GCUcaUGCUAGCGC-GCUGGGU-GUgCG- -5'
27696 3' -55.2 NC_005882.1 + 4528 0.68 0.531322
Target:  5'- uCGAGgucguCGAggcUGCGCGG-CCAUACGCc -3'
miRNA:   3'- -GCUCau---GCUa--GCGCGCUgGGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 17936 0.68 0.509942
Target:  5'- cCGAG-GCGGUCGCcggccgccuCGACCUugAUGCc -3'
miRNA:   3'- -GCUCaUGCUAGCGc--------GCUGGGugUGCG- -5'
27696 3' -55.2 NC_005882.1 + 2236 0.69 0.488931
Target:  5'- aCGAGUGCcuUCGCGauuggaCGACggaCGCACGCc -3'
miRNA:   3'- -GCUCAUGcuAGCGC------GCUGg--GUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 13435 0.69 0.488931
Target:  5'- uGAGcGCGAUCGCGuCGAgCUugGCu- -3'
miRNA:   3'- gCUCaUGCUAGCGC-GCUgGGugUGcg -5'
27696 3' -55.2 NC_005882.1 + 25657 0.69 0.484777
Target:  5'- cCGAGccccugGCGuugcucacgcaGCGCGGCgCCGCGCGCc -3'
miRNA:   3'- -GCUCa-----UGCuag--------CGCGCUG-GGUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 25396 0.69 0.478578
Target:  5'- cCGAGUAgcGUCGCGcCGAUCUuUACGCc -3'
miRNA:   3'- -GCUCAUgcUAGCGC-GCUGGGuGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 18001 0.69 0.478578
Target:  5'- -cGGUGCGGaaCGuCGCGACCU-CGCGCa -3'
miRNA:   3'- gcUCAUGCUa-GC-GCGCUGGGuGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 28360 0.69 0.478578
Target:  5'- gCGcAGUccGCGAUgCGCGUGGCCguCgACGCg -3'
miRNA:   3'- -GC-UCA--UGCUA-GCGCGCUGGguG-UGCG- -5'
27696 3' -55.2 NC_005882.1 + 18851 0.69 0.472419
Target:  5'- aCGGGUcuuuuaaucggcuuuACGAUUGCGcCGGCgugaUACGCGCg -3'
miRNA:   3'- -GCUCA---------------UGCUAGCGC-GCUGg---GUGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 4689 0.69 0.468334
Target:  5'- aCGAGcugcaGCGGUUGCuGuUGACCCGCuCGCg -3'
miRNA:   3'- -GCUCa----UGCUAGCG-C-GCUGGGUGuGCG- -5'
27696 3' -55.2 NC_005882.1 + 19384 0.69 0.468334
Target:  5'- uCGAGUcgauccGCGAagUCGCGCGACaagaCgAUGCGCc -3'
miRNA:   3'- -GCUCA------UGCU--AGCGCGCUGg---G-UGUGCG- -5'
27696 3' -55.2 NC_005882.1 + 25451 0.69 0.468334
Target:  5'- gGGGgacGCGAUgGCGCgGGCCguUGCGCa -3'
miRNA:   3'- gCUCa--UGCUAgCGCG-CUGGguGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.