miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27698 3' -57.4 NC_005882.1 + 12455 0.66 0.538278
Target:  5'- -uCGAgCCGCGUuaCGUCaaggCCGGGUUCGGg -3'
miRNA:   3'- ucGCUaGGCGUA--GCGG----GGCUCAAGCC- -5'
27698 3' -57.4 NC_005882.1 + 21726 0.66 0.538278
Target:  5'- gGGCGAaaugaaggUCCGCG-CGCgCCGucgccAGUUCGa -3'
miRNA:   3'- -UCGCU--------AGGCGUaGCGgGGC-----UCAAGCc -5'
27698 3' -57.4 NC_005882.1 + 31013 0.66 0.534
Target:  5'- cGCGAUCCGCcggugggagccgCGCUgCGAGgUCGu -3'
miRNA:   3'- uCGCUAGGCGua----------GCGGgGCUCaAGCc -5'
27698 3' -57.4 NC_005882.1 + 29916 0.66 0.527605
Target:  5'- cGGCGGccagcUUCGUGUCGCCCCGcaucUCGa -3'
miRNA:   3'- -UCGCU-----AGGCGUAGCGGGGCuca-AGCc -5'
27698 3' -57.4 NC_005882.1 + 22255 0.66 0.527605
Target:  5'- cAGCGGUCCGuCGUUcgGCUCCGcGUcuUCGa -3'
miRNA:   3'- -UCGCUAGGC-GUAG--CGGGGCuCA--AGCc -5'
27698 3' -57.4 NC_005882.1 + 10828 0.66 0.527605
Target:  5'- aGGCGGUCgCGCucGUCGCUgCGGGgcUCGu -3'
miRNA:   3'- -UCGCUAG-GCG--UAGCGGgGCUCa-AGCc -5'
27698 3' -57.4 NC_005882.1 + 18341 0.66 0.527605
Target:  5'- cGCGG-CCGCGUCGCgUCGcaAGgcCGGu -3'
miRNA:   3'- uCGCUaGGCGUAGCGgGGC--UCaaGCC- -5'
27698 3' -57.4 NC_005882.1 + 19503 0.66 0.506506
Target:  5'- uGGUGGguaCGguUgcCGCCCCGcGUUCGGc -3'
miRNA:   3'- -UCGCUag-GCguA--GCGGGGCuCAAGCC- -5'
27698 3' -57.4 NC_005882.1 + 1705 0.67 0.455463
Target:  5'- cGGCGAagaaaucaagauUCCaGCGUCgaaaGCCCCGaAGUUCa- -3'
miRNA:   3'- -UCGCU------------AGG-CGUAG----CGGGGC-UCAAGcc -5'
27698 3' -57.4 NC_005882.1 + 20487 0.67 0.435832
Target:  5'- aAGCGAUCCGCAcgaagaUCGgCCgCCGgccgaacacgauGGUgaUCGGu -3'
miRNA:   3'- -UCGCUAGGCGU------AGC-GG-GGC------------UCA--AGCC- -5'
27698 3' -57.4 NC_005882.1 + 23243 0.68 0.416699
Target:  5'- cGGCGcAUCgauguaCGCgAUCGCCCCGAGcuggaCGGc -3'
miRNA:   3'- -UCGC-UAG------GCG-UAGCGGGGCUCaa---GCC- -5'
27698 3' -57.4 NC_005882.1 + 6801 0.68 0.374705
Target:  5'- gAGCGGaaaUCCGCAaggaaaccagcgcgaUCGCCUuCGAGgcggagUCGGu -3'
miRNA:   3'- -UCGCU---AGGCGU---------------AGCGGG-GCUCa-----AGCC- -5'
27698 3' -57.4 NC_005882.1 + 14635 0.68 0.371191
Target:  5'- cGUGAUCCGCuUCGCgUCGGGcuUUCGc -3'
miRNA:   3'- uCGCUAGGCGuAGCGgGGCUC--AAGCc -5'
27698 3' -57.4 NC_005882.1 + 15246 0.69 0.337304
Target:  5'- cAGCGggCCgaGCGUCGCUUCGAGccaaucgcggcaUUCGGc -3'
miRNA:   3'- -UCGCuaGG--CGUAGCGGGGCUC------------AAGCC- -5'
27698 3' -57.4 NC_005882.1 + 26026 0.7 0.320437
Target:  5'- cAGCG--CCGCGUCGCccuugauCCCGAGcgucUCGGa -3'
miRNA:   3'- -UCGCuaGGCGUAGCG-------GGGCUCa---AGCC- -5'
27698 3' -57.4 NC_005882.1 + 598 0.7 0.295223
Target:  5'- uGCGGUCgGCAaucUCGCgCCCGAGcugguucgccuggUCGGc -3'
miRNA:   3'- uCGCUAGgCGU---AGCG-GGGCUCa------------AGCC- -5'
27698 3' -57.4 NC_005882.1 + 16751 0.71 0.262693
Target:  5'- cGCGcgUCGaCGUCGCCUCGguGGUUUGGu -3'
miRNA:   3'- uCGCuaGGC-GUAGCGGGGC--UCAAGCC- -5'
27698 3' -57.4 NC_005882.1 + 17709 0.72 0.224715
Target:  5'- uGGCGAUccucgacagCCGCA-CGCgCCCGAGccaUCGGg -3'
miRNA:   3'- -UCGCUA---------GGCGUaGCG-GGGCUCa--AGCC- -5'
27698 3' -57.4 NC_005882.1 + 30915 0.98 0.002902
Target:  5'- cAGCGAUCCGCAUCGCCCCGAGUU-GGc -3'
miRNA:   3'- -UCGCUAGGCGUAGCGGGGCUCAAgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.