miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27698 5' -50.7 NC_005882.1 + 3552 0.66 0.838601
Target:  5'- --aUGaAUCUCGccgcgggccuggGCGUGCCGGUCGuCa -3'
miRNA:   3'- uagACaUAGAGC------------UGUACGGCUAGCuG- -5'
27698 5' -50.7 NC_005882.1 + 3258 0.66 0.809217
Target:  5'- gAUCUGgAUCgUCGGCcgGCCGccGUCGcGCg -3'
miRNA:   3'- -UAGACaUAG-AGCUGuaCGGC--UAGC-UG- -5'
27698 5' -50.7 NC_005882.1 + 16188 0.67 0.78854
Target:  5'- -cCUGgggCaaggUCGGCAacuacaucgUGCCGAUCGACg -3'
miRNA:   3'- uaGACauaG----AGCUGU---------ACGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 31532 0.67 0.771456
Target:  5'- cGUCgcucGUCUCGACAcgcgUGCCGGcugcaaucagcagguUCGACg -3'
miRNA:   3'- -UAGaca-UAGAGCUGU----ACGGCU---------------AGCUG- -5'
27698 5' -50.7 NC_005882.1 + 518 0.67 0.756158
Target:  5'- aAUCUGccgAUCUCgcuggGACA-GCCGGUaCGACa -3'
miRNA:   3'- -UAGACa--UAGAG-----CUGUaCGGCUA-GCUG- -5'
27698 5' -50.7 NC_005882.1 + 23668 0.67 0.756158
Target:  5'- ---aGU-UCgUCGACGcGCCGAUCGACc -3'
miRNA:   3'- uagaCAuAG-AGCUGUaCGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 5738 0.68 0.745055
Target:  5'- uUCUGaugCUCGAC--GCCGgAUCGGCg -3'
miRNA:   3'- uAGACauaGAGCUGuaCGGC-UAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 23186 0.68 0.73382
Target:  5'- gAUCgcGUAcaUCGAUgcGCCGAUCGGCa -3'
miRNA:   3'- -UAGa-CAUagAGCUGuaCGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 16816 0.68 0.722468
Target:  5'- -cCUGaacUUCGACGgcGCCGAUCGACc -3'
miRNA:   3'- uaGACauaGAGCUGUa-CGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 23265 0.69 0.664439
Target:  5'- -cCUGcg-CgagCGuCGUGCCGAUCGGCg -3'
miRNA:   3'- uaGACauaGa--GCuGUACGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 12426 0.69 0.645607
Target:  5'- -gUUGaaccgCUCGACAuggccgaaccagcguUGCCGAUCGGCg -3'
miRNA:   3'- uaGACaua--GAGCUGU---------------ACGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 3708 0.78 0.214917
Target:  5'- uUCggccGUCUCGACAaGCCGGUCGGCg -3'
miRNA:   3'- uAGaca-UAGAGCUGUaCGGCUAGCUG- -5'
27698 5' -50.7 NC_005882.1 + 30951 1.07 0.00224
Target:  5'- uAUCUGUAUCUCGACAUGCCGAUCGACc -3'
miRNA:   3'- -UAGACAUAGAGCUGUACGGCUAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.