miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27699 3' -59.2 NC_005882.1 + 24540 0.69 0.24439
Target:  5'- aGGCCCGcCGAagcgggccaAGACGACaacgaCUGCGCa- -3'
miRNA:   3'- gUCGGGC-GCU---------UCUGCUGc----GACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 4208 0.69 0.23802
Target:  5'- uCGGgCgGCGGcaAGACGACGCugaUGCGCg- -3'
miRNA:   3'- -GUCgGgCGCU--UCUGCUGCG---ACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 30067 0.69 0.219739
Target:  5'- aCGGCgucaCCGCGaAAGGCGACGUcgGCGUUg -3'
miRNA:   3'- -GUCG----GGCGC-UUCUGCUGCGa-CGCGAa -5'
27699 3' -59.2 NC_005882.1 + 15533 0.69 0.213918
Target:  5'- -cGCCCGUGAAGGCGGCGUU-CGa-- -3'
miRNA:   3'- guCGGGCGCUUCUGCUGCGAcGCgaa -5'
27699 3' -59.2 NC_005882.1 + 26858 0.69 0.213343
Target:  5'- aCGGUCgggGCGAAGugGACGCUguuucgcGCGCUc -3'
miRNA:   3'- -GUCGGg--CGCUUCugCUGCGA-------CGCGAa -5'
27699 3' -59.2 NC_005882.1 + 26706 0.7 0.197242
Target:  5'- aGGUCCGUGAGcGACGGCaGCaGCGCg- -3'
miRNA:   3'- gUCGGGCGCUU-CUGCUG-CGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 14127 0.7 0.191941
Target:  5'- aAGgCCGCGAAGaacaucGCGACGCUggcccGCGCg- -3'
miRNA:   3'- gUCgGGCGCUUC------UGCUGCGA-----CGCGaa -5'
27699 3' -59.2 NC_005882.1 + 27812 0.7 0.191941
Target:  5'- -uGCUCGCGAAGcGCGAgCGCcGCGCg- -3'
miRNA:   3'- guCGGGCGCUUC-UGCU-GCGaCGCGaa -5'
27699 3' -59.2 NC_005882.1 + 22469 0.7 0.186254
Target:  5'- gGGCgCGCGGGcuuggucGACGGCGCUGCGg-- -3'
miRNA:   3'- gUCGgGCGCUU-------CUGCUGCGACGCgaa -5'
27699 3' -59.2 NC_005882.1 + 19264 0.71 0.153874
Target:  5'- aGGCCCuuGAGGGcCGGCgGCUGCGCa- -3'
miRNA:   3'- gUCGGGcgCUUCU-GCUG-CGACGCGaa -5'
27699 3' -59.2 NC_005882.1 + 13889 0.72 0.133691
Target:  5'- aUAGCCCGUGAAGuugcccuCGACGagcGCGCUUu -3'
miRNA:   3'- -GUCGGGCGCUUCu------GCUGCga-CGCGAA- -5'
27699 3' -59.2 NC_005882.1 + 25962 0.72 0.133691
Target:  5'- -cGCUCGgGAucaaGGGCGACGCgGCGCUg -3'
miRNA:   3'- guCGGGCgCU----UCUGCUGCGaCGCGAa -5'
27699 3' -59.2 NC_005882.1 + 30621 0.74 0.092118
Target:  5'- uGGCCggaucggGCGgcGAUGGCGCUGCGCUg -3'
miRNA:   3'- gUCGGg------CGCuuCUGCUGCGACGCGAa -5'
27699 3' -59.2 NC_005882.1 + 31402 1.04 0.000471
Target:  5'- gCAGCCCGCGAAGACGACGCUGCGCUUc -3'
miRNA:   3'- -GUCGGGCGCUUCUGCUGCGACGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.