miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27700 5' -54.6 NC_005882.1 + 12198 0.67 0.579877
Target:  5'- gGCCGgauaGGCGCCcgCGAUccaGUCGACGg -3'
miRNA:   3'- -CGGC----UCGCGGa-GCUGuugUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 30648 0.67 0.568598
Target:  5'- cGCUGAcGgGCaaCGugAACGUCGACGg -3'
miRNA:   3'- -CGGCU-CgCGgaGCugUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 17181 0.67 0.568598
Target:  5'- gGCCGAGCuguauccgaGCCUCGACGcggacgcgcuGCAggaaCGGCu- -3'
miRNA:   3'- -CGGCUCG---------CGGAGCUGU----------UGUa---GCUGua -5'
27700 5' -54.6 NC_005882.1 + 14809 0.67 0.546214
Target:  5'- uUCGA-CGCa-CGACGGCGUCGACAa -3'
miRNA:   3'- cGGCUcGCGgaGCUGUUGUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 8934 0.67 0.539552
Target:  5'- cGCCGAcccgGCaaaagcgcucgcauuGCCUCGACAccGCGUCGcaGCGUg -3'
miRNA:   3'- -CGGCU----CG---------------CGGAGCUGU--UGUAGC--UGUA- -5'
27700 5' -54.6 NC_005882.1 + 1135 0.67 0.535126
Target:  5'- uGCCGAGCcugagGCCcgcgaucagauuUCGAguACAUCGAUGUc -3'
miRNA:   3'- -CGGCUCG-----CGG------------AGCUguUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 15138 0.67 0.535126
Target:  5'- aGCCGAcauGCGCgaCUCGAuCAGCGcgcgCGACAg -3'
miRNA:   3'- -CGGCU---CGCG--GAGCU-GUUGUa---GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 21156 0.68 0.524119
Target:  5'- cGCCGAGCGCCUUcGCGcCGgcugCGcACAc -3'
miRNA:   3'- -CGGCUCGCGGAGcUGUuGUa---GC-UGUa -5'
27700 5' -54.6 NC_005882.1 + 30038 0.68 0.524119
Target:  5'- cGCCGAGCGCUUCagcuCGACuUCGGu-- -3'
miRNA:   3'- -CGGCUCGCGGAGcu--GUUGuAGCUgua -5'
27700 5' -54.6 NC_005882.1 + 18049 0.68 0.513199
Target:  5'- aGCCGA-CGUC-CGGCGACA-CGACGa -3'
miRNA:   3'- -CGGCUcGCGGaGCUGUUGUaGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 27534 0.68 0.491649
Target:  5'- cGCCcaGGGCGCCgcaaUCGGCAucgggcgcuCGUCGGCGg -3'
miRNA:   3'- -CGG--CUCGCGG----AGCUGUu--------GUAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 23263 0.68 0.490583
Target:  5'- uGCgCGAGCGUCgugccgaUCGGCG-CAUCGAUGUa -3'
miRNA:   3'- -CG-GCUCGCGG-------AGCUGUuGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 19814 0.68 0.481032
Target:  5'- cGCCG-GCGUgaCGACGACGggcgcCGACAc -3'
miRNA:   3'- -CGGCuCGCGgaGCUGUUGUa----GCUGUa -5'
27700 5' -54.6 NC_005882.1 + 15997 0.68 0.481032
Target:  5'- aCCGAGUGCCUUGA--GCAccggguccggauUCGGCAg -3'
miRNA:   3'- cGGCUCGCGGAGCUguUGU------------AGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 8245 0.68 0.481032
Target:  5'- gGCgGcaAGCGCCggUCGGCugauCAUCGACAUc -3'
miRNA:   3'- -CGgC--UCGCGG--AGCUGuu--GUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 22954 0.68 0.481032
Target:  5'- cGCCGGGUGCgaCGGCGGCcaaggCGACc- -3'
miRNA:   3'- -CGGCUCGCGgaGCUGUUGua---GCUGua -5'
27700 5' -54.6 NC_005882.1 + 31783 0.69 0.470527
Target:  5'- cGCCaaGAGCGCgcaccagucgaUCGuCGACGUCGGCGUa -3'
miRNA:   3'- -CGG--CUCGCGg----------AGCuGUUGUAGCUGUA- -5'
27700 5' -54.6 NC_005882.1 + 30137 0.69 0.449877
Target:  5'- -aUGAGCGagacCCUCGACGAguUCGGCGc -3'
miRNA:   3'- cgGCUCGC----GGAGCUGUUguAGCUGUa -5'
27700 5' -54.6 NC_005882.1 + 3602 0.69 0.448858
Target:  5'- aGCCGAgugcgcaGCGCgUCGACGccgcuuGCGUCGAUc- -3'
miRNA:   3'- -CGGCU-------CGCGgAGCUGU------UGUAGCUGua -5'
27700 5' -54.6 NC_005882.1 + 32054 0.69 0.429736
Target:  5'- aCCG-GCGUCggCGAUcgGACGUCGACGUa -3'
miRNA:   3'- cGGCuCGCGGa-GCUG--UUGUAGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.