miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27703 5' -56.5 NC_005882.1 + 27539 0.66 0.53898
Target:  5'- aGGgcGCCGCAAUCGgcaUCGGGC-GCUc -3'
miRNA:   3'- -CCuaCGGUGUUGGCaa-GGUCCGcCGA- -5'
27703 5' -56.5 NC_005882.1 + 25651 0.66 0.528092
Target:  5'- cGGcUGCCACGGCCGcgCCcGuaauCGGCg -3'
miRNA:   3'- -CCuACGGUGUUGGCaaGGuCc---GCCGa -5'
27703 5' -56.5 NC_005882.1 + 28571 0.66 0.517286
Target:  5'- uGGAUGCgGucCGAUCGgcgCaAGGCGGCUu -3'
miRNA:   3'- -CCUACGgU--GUUGGCaa-GgUCCGCCGA- -5'
27703 5' -56.5 NC_005882.1 + 21051 0.66 0.517286
Target:  5'- ---gGCCugAACCGcUUCCAGuucguCGGCUu -3'
miRNA:   3'- ccuaCGGugUUGGC-AAGGUCc----GCCGA- -5'
27703 5' -56.5 NC_005882.1 + 7167 0.66 0.517286
Target:  5'- ---gGCCACGACCaaccUCCAGGCacGCUu -3'
miRNA:   3'- ccuaCGGUGUUGGca--AGGUCCGc-CGA- -5'
27703 5' -56.5 NC_005882.1 + 25761 0.66 0.495949
Target:  5'- cGAUGUCGCGcagGCCGgcuUCgaAGGUGGCg -3'
miRNA:   3'- cCUACGGUGU---UGGCa--AGg-UCCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 15528 0.66 0.495949
Target:  5'- -cAUGCCGC--CCGUga-AGGCGGCg -3'
miRNA:   3'- ccUACGGUGuuGGCAaggUCCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 13085 0.67 0.485431
Target:  5'- cGAUGUCGCGGCUGc----GGCGGCUg -3'
miRNA:   3'- cCUACGGUGUUGGCaagguCCGCCGA- -5'
27703 5' -56.5 NC_005882.1 + 3474 0.67 0.47502
Target:  5'- cGGcgGUgACGACCGgcacgcCCAGGCccgcGGCg -3'
miRNA:   3'- -CCuaCGgUGUUGGCaa----GGUCCG----CCGa -5'
27703 5' -56.5 NC_005882.1 + 4916 0.67 0.47502
Target:  5'- ---cGCCGCucucGCUGaUCgAGGCGGCa -3'
miRNA:   3'- ccuaCGGUGu---UGGCaAGgUCCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 14453 0.68 0.415076
Target:  5'- --uUGCuCGCAGCCag-CCAGcGCGGCa -3'
miRNA:   3'- ccuACG-GUGUUGGcaaGGUC-CGCCGa -5'
27703 5' -56.5 NC_005882.1 + 26947 0.68 0.386896
Target:  5'- gGGA-GCCGCcACCGgcCCAGaGCGcGCg -3'
miRNA:   3'- -CCUaCGGUGuUGGCaaGGUC-CGC-CGa -5'
27703 5' -56.5 NC_005882.1 + 29382 0.69 0.377786
Target:  5'- ---aGCCGCGAUCGUcgCCAGcGUGGUg -3'
miRNA:   3'- ccuaCGGUGUUGGCAa-GGUC-CGCCGa -5'
27703 5' -56.5 NC_005882.1 + 28262 0.69 0.368822
Target:  5'- aGGUGCCgccgGCGGCCGcg-CAGGCGGUc -3'
miRNA:   3'- cCUACGG----UGUUGGCaagGUCCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 14256 0.69 0.363514
Target:  5'- cGGcgGCCGCuuCCGcgcgugccugcaccUCCAGGCGGa- -3'
miRNA:   3'- -CCuaCGGUGuuGGCa-------------AGGUCCGCCga -5'
27703 5' -56.5 NC_005882.1 + 27664 0.69 0.363514
Target:  5'- gGGAcGCCGCGGCCGcggCCugcgucgccaugccGGCGGCc -3'
miRNA:   3'- -CCUaCGGUGUUGGCaa-GGu-------------CCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 30612 0.71 0.259016
Target:  5'- aGGgcGgCAUGGCCGgaUCGGGCGGCg -3'
miRNA:   3'- -CCuaCgGUGUUGGCaaGGUCCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 27106 0.72 0.21491
Target:  5'- gGGAUGCUGCuggcCCGcgUCCuGGGCGGCc -3'
miRNA:   3'- -CCUACGGUGuu--GGCa-AGG-UCCGCCGa -5'
27703 5' -56.5 NC_005882.1 + 33802 1.09 0.000403
Target:  5'- cGGAUGCCACAACCGUUCCAGGCGGCUc -3'
miRNA:   3'- -CCUACGGUGUUGGCAAGGUCCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.