miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27704 3' -51.4 NC_005882.1 + 17223 0.67 0.730283
Target:  5'- cUCGGcCAGCAuGC-CGAgcAGCUCGuCGGCa -3'
miRNA:   3'- aAGCU-GUUGU-CGuGCU--UCGAGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 15592 0.67 0.730283
Target:  5'- cUUCGaACGccgccuucacggGCGGCAUGu-GCUCGCGAUa -3'
miRNA:   3'- -AAGC-UGU------------UGUCGUGCuuCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 18698 0.67 0.730283
Target:  5'- --aGGCGcgcAgAGCGCGAucGGCUCGuCGACa -3'
miRNA:   3'- aagCUGU---UgUCGUGCU--UCGAGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 13411 0.67 0.730283
Target:  5'- cUUCGAUGACGgucugguugcGCACGuAGUcuUCGCGGCg -3'
miRNA:   3'- -AAGCUGUUGU----------CGUGCuUCG--AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 29741 0.67 0.726858
Target:  5'- -gCGGCGACAcgcugcggcuuuccGCACGGgccGGCUCcaagGCAACg -3'
miRNA:   3'- aaGCUGUUGU--------------CGUGCU---UCGAG----CGUUG- -5'
27704 3' -51.4 NC_005882.1 + 12981 0.67 0.718829
Target:  5'- -cCGGCGGCAGCACu--GgUCGCGGg -3'
miRNA:   3'- aaGCUGUUGUCGUGcuuCgAGCGUUg -5'
27704 3' -51.4 NC_005882.1 + 29285 0.67 0.718829
Target:  5'- gUCGACGGCGGUucguCGAAGCcaaucUCGuCGAUc -3'
miRNA:   3'- aAGCUGUUGUCGu---GCUUCG-----AGC-GUUG- -5'
27704 3' -51.4 NC_005882.1 + 13019 0.67 0.707275
Target:  5'- gUCGACGcCAGCcgcCGcAGC-CGCGACa -3'
miRNA:   3'- aAGCUGUuGUCGu--GCuUCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 22054 0.67 0.707275
Target:  5'- -cUGGC-GCAGCACGA---UCGCGACg -3'
miRNA:   3'- aaGCUGuUGUCGUGCUucgAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 3299 0.67 0.707275
Target:  5'- cUUCGGC--CAGCACGcgguagcccAGGCcgCGCAGCg -3'
miRNA:   3'- -AAGCUGuuGUCGUGC---------UUCGa-GCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 3938 0.67 0.707275
Target:  5'- aUCGACGAagcGCACGcgcuGCcgaUCGCGACg -3'
miRNA:   3'- aAGCUGUUgu-CGUGCuu--CG---AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 22645 0.67 0.683925
Target:  5'- gUCGAC-GCGGCGCaGuucGGCcCGCAGCu -3'
miRNA:   3'- aAGCUGuUGUCGUG-Cu--UCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 14431 0.67 0.682751
Target:  5'- --gGGCGaaGCAGCcgauucaGCGuuGCUCGCAGCc -3'
miRNA:   3'- aagCUGU--UGUCG-------UGCuuCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 11653 0.68 0.672157
Target:  5'- -gCGAUGGCuGCaACGAGGaugaUCGCGGCg -3'
miRNA:   3'- aaGCUGUUGuCG-UGCUUCg---AGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 23502 0.68 0.672157
Target:  5'- -cCGACAGCGGCcgcuCGAcGCcCGUGACg -3'
miRNA:   3'- aaGCUGUUGUCGu---GCUuCGaGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 17323 0.68 0.670977
Target:  5'- gUCGACcGCuucaGGCAUggagacgcccccaGAGGUUCGCGACg -3'
miRNA:   3'- aAGCUGuUG----UCGUG-------------CUUCGAGCGUUG- -5'
27704 3' -51.4 NC_005882.1 + 14720 0.68 0.660345
Target:  5'- aUCGACGagGCAGCguuccACGAgcAGCUCgGCGAg -3'
miRNA:   3'- aAGCUGU--UGUCG-----UGCU--UCGAG-CGUUg -5'
27704 3' -51.4 NC_005882.1 + 5949 0.68 0.660345
Target:  5'- -cCGGCuucagguaguACAGCACGcacAGGCUCGCGu- -3'
miRNA:   3'- aaGCUGu---------UGUCGUGC---UUCGAGCGUug -5'
27704 3' -51.4 NC_005882.1 + 26282 0.68 0.648502
Target:  5'- gUCGcCGGCGGCuauucgagcuACGAAgGCUCGCuGCa -3'
miRNA:   3'- aAGCuGUUGUCG----------UGCUU-CGAGCGuUG- -5'
27704 3' -51.4 NC_005882.1 + 25209 0.68 0.636642
Target:  5'- --aGACGGCgAGCACGAcgccGGCaaUCGCGAUc -3'
miRNA:   3'- aagCUGUUG-UCGUGCU----UCG--AGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.