Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 28372 | 0.66 | 0.27158 |
|
Target: 5'- aUGC-GCGuGGCCGUCGacGCggucaaGGUCGUc -3' miRNA: 3'- cACGuCGC-CCGGCAGC--CGag----CCAGCA- -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 31748 | 0.67 | 0.221615 |
|
Target: 5'- -aGCacGGCGGGCUccCGGCUCGcGUaCGUg -3' miRNA: 3'- caCG--UCGCCCGGcaGCCGAGC-CA-GCA- -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 31602 | 0.67 | 0.204996 |
|
Target: 5'- -gGCAGCcgGGGCaacUCGGCUCGcUCGUc -3' miRNA: 3'- caCGUCG--CCCGgc-AGCCGAGCcAGCA- -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 3544 | 0.69 | 0.16588 |
|
Target: 5'- -cGCcGCGGGCC-UgGGCgugcCGGUCGUc -3' miRNA: 3'- caCGuCGCCCGGcAgCCGa---GCCAGCA- -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 16682 | 0.69 | 0.157206 |
|
Target: 5'- aGUGCAGCaGGCgcucguagaCGUCGGCgcuacCGGUCu- -3' miRNA: 3'- -CACGUCGcCCG---------GCAGCCGa----GCCAGca -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 6643 | 0.69 | 0.148944 |
|
Target: 5'- cGUGCGGCGcGCCGUgCGuCUCGG-CGUg -3' miRNA: 3'- -CACGUCGCcCGGCA-GCcGAGCCaGCA- -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 23361 | 0.74 | 0.068421 |
|
Target: 5'- cGUGCGGCGGGCCuUCGcGCaCGuGUCGa -3' miRNA: 3'- -CACGUCGCCCGGcAGC-CGaGC-CAGCa -5' |
|||||||
| 27704 | 5' | -62.8 | NC_005882.1 | + | 34477 | 1.06 | 0.000199 |
|
Target: 5'- uGUGCAGCGGGCCGUCGGCUCGGUCGUc -3' miRNA: 3'- -CACGUCGCCCGGCAGCCGAGCCAGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home