Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27705 | 3' | -57 | NC_005882.1 | + | 35836 | 1.13 | 0.000247 |
Target: 5'- aGCGUCGCGAUCGCUGCCUUCUGCCGGa -3' miRNA: 3'- -CGCAGCGCUAGCGACGGAAGACGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 18245 | 0.72 | 0.248221 |
Target: 5'- cGCGaucUUGCGcAUCGCgccaGCCUUCUgaugGCCGGc -3' miRNA: 3'- -CGC---AGCGC-UAGCGa---CGGAAGA----CGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 6372 | 0.72 | 0.223459 |
Target: 5'- cGCGUCGUaGAUCGCaccuuuuuUGCCgug-GCCGGc -3' miRNA: 3'- -CGCAGCG-CUAGCG--------ACGGaagaCGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 15729 | 0.7 | 0.296955 |
Target: 5'- gGCGUCGcCGuggCGCuUGCCgucgUCcugGCCGGu -3' miRNA: 3'- -CGCAGC-GCua-GCG-ACGGa---AGa--CGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 8154 | 0.69 | 0.344384 |
Target: 5'- cCGUCGCG-UCGCgGCCg---GUCGGg -3' miRNA: 3'- cGCAGCGCuAGCGaCGGaagaCGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 12575 | 0.69 | 0.351105 |
Target: 5'- gGCGgcuggCGCGGUCGCUuUCUUCggcggcuaucacGCCGGu -3' miRNA: 3'- -CGCa----GCGCUAGCGAcGGAAGa-----------CGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 26779 | 0.69 | 0.352799 |
Target: 5'- -gGUCGCGAcgcUCGCgGCCg---GCUGGg -3' miRNA: 3'- cgCAGCGCU---AGCGaCGGaagaCGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 17992 | 0.69 | 0.378909 |
Target: 5'- aCGUCGCGAccUCGC-GCag-CUcGCCGGu -3' miRNA: 3'- cGCAGCGCU--AGCGaCGgaaGA-CGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 19595 | 0.68 | 0.387895 |
Target: 5'- cGCGUCgGCGAgcuGCUGCUUga-GCUGGg -3' miRNA: 3'- -CGCAG-CGCUag-CGACGGAagaCGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 8854 | 0.68 | 0.425209 |
Target: 5'- uGCGaCGCGGUgucgaggcaaUGCgaGCgCUUUUGCCGGg -3' miRNA: 3'- -CGCaGCGCUA----------GCGa-CG-GAAGACGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 8052 | 0.68 | 0.406283 |
Target: 5'- uCGUCGCGAUCGUUucGUCUgcauugGCCGa -3' miRNA: 3'- cGCAGCGCUAGCGA--CGGAaga---CGGCc -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 7386 | 0.68 | 0.39702 |
Target: 5'- uCGUCGCGA-CGUUGUUggugCUGCuCGGc -3' miRNA: 3'- cGCAGCGCUaGCGACGGaa--GACG-GCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 25827 | 0.68 | 0.388802 |
Target: 5'- gGCGUCGgcacacUGGUCGCUGCCggCauggacgcgaaggaaGCCGGc -3' miRNA: 3'- -CGCAGC------GCUAGCGACGGaaGa--------------CGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 3869 | 0.68 | 0.406283 |
Target: 5'- aGCGUCGCGAUCGgCagcgcgUGCgCUUC-GUCGa -3' miRNA: 3'- -CGCAGCGCUAGC-G------ACG-GAAGaCGGCc -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 13133 | 0.67 | 0.495318 |
Target: 5'- uGC-UCGCGA-CGUucaucgGCCUUCUGaUCGGg -3' miRNA: 3'- -CGcAGCGCUaGCGa-----CGGAAGAC-GGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 21996 | 0.67 | 0.484966 |
Target: 5'- cCGUCGCGAUCGUgcugcGCCagcUCaacgGCCGcGg -3' miRNA: 3'- cGCAGCGCUAGCGa----CGGa--AGa---CGGC-C- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 7529 | 0.67 | 0.484966 |
Target: 5'- uGCGUacucuuugGCGGUUGCUGCgaCUUCgUGCuCGGc -3' miRNA: 3'- -CGCAg-------CGCUAGCGACG--GAAG-ACG-GCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 13471 | 0.67 | 0.46458 |
Target: 5'- uGCGcCGCGaAUCGCUGCgCUgguaUCUGauuCUGGc -3' miRNA: 3'- -CGCaGCGC-UAGCGACG-GA----AGAC---GGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 18347 | 0.67 | 0.44465 |
Target: 5'- cGCGUCGCG-UCGCaagGCCggUCUGauGa -3' miRNA: 3'- -CGCAGCGCuAGCGa--CGGa-AGACggCc -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 35885 | 0.67 | 0.44465 |
Target: 5'- aGCGaUCGCGA-CGCUGaccgcaacacucCCUUUUGCacaGGa -3' miRNA: 3'- -CGC-AGCGCUaGCGAC------------GGAAGACGg--CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home