Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27705 | 3' | -57 | NC_005882.1 | + | 26779 | 0.69 | 0.352799 |
Target: 5'- -gGUCGCGAcgcUCGCgGCCg---GCUGGg -3' miRNA: 3'- cgCAGCGCU---AGCGaCGGaagaCGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 27121 | 0.66 | 0.548445 |
Target: 5'- cGCGUCcuggGCGGccagcUCGUgaacgGCCUgaugCUGgCCGGg -3' miRNA: 3'- -CGCAG----CGCU-----AGCGa----CGGAa---GAC-GGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 27661 | 0.66 | 0.516314 |
Target: 5'- aCGcCGCGGcCGCgGCCUgcgucgccaUGCCGGc -3' miRNA: 3'- cGCaGCGCUaGCGaCGGAag-------ACGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 28765 | 0.67 | 0.495318 |
Target: 5'- cCGUCGCGAcuuUCGCgGCCagUUUGCUc- -3' miRNA: 3'- cGCAGCGCU---AGCGaCGGa-AGACGGcc -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 30076 | 0.67 | 0.44465 |
Target: 5'- --uUCGCGGUgcCGCcGCC-UUUGCCGGc -3' miRNA: 3'- cgcAGCGCUA--GCGaCGGaAGACGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 32126 | 0.67 | 0.46458 |
Target: 5'- cGUGccugCGCGAUCGUUGUg-UCggcGCCGGc -3' miRNA: 3'- -CGCa---GCGCUAGCGACGgaAGa--CGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 35836 | 1.13 | 0.000247 |
Target: 5'- aGCGUCGCGAUCGCUGCCUUCUGCCGGa -3' miRNA: 3'- -CGCAGCGCUAGCGACGGAAGACGGCC- -5' |
|||||||
27705 | 3' | -57 | NC_005882.1 | + | 35885 | 0.67 | 0.44465 |
Target: 5'- aGCGaUCGCGA-CGCUGaccgcaacacucCCUUUUGCacaGGa -3' miRNA: 3'- -CGC-AGCGCUaGCGAC------------GGAAGACGg--CC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home