miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27705 3' -57 NC_005882.1 + 35885 0.67 0.44465
Target:  5'- aGCGaUCGCGA-CGCUGaccgcaacacucCCUUUUGCacaGGa -3'
miRNA:   3'- -CGC-AGCGCUaGCGAC------------GGAAGACGg--CC- -5'
27705 3' -57 NC_005882.1 + 35836 1.13 0.000247
Target:  5'- aGCGUCGCGAUCGCUGCCUUCUGCCGGa -3'
miRNA:   3'- -CGCAGCGCUAGCGACGGAAGACGGCC- -5'
27705 3' -57 NC_005882.1 + 32126 0.67 0.46458
Target:  5'- cGUGccugCGCGAUCGUUGUg-UCggcGCCGGc -3'
miRNA:   3'- -CGCa---GCGCUAGCGACGgaAGa--CGGCC- -5'
27705 3' -57 NC_005882.1 + 30076 0.67 0.44465
Target:  5'- --uUCGCGGUgcCGCcGCC-UUUGCCGGc -3'
miRNA:   3'- cgcAGCGCUA--GCGaCGGaAGACGGCC- -5'
27705 3' -57 NC_005882.1 + 28765 0.67 0.495318
Target:  5'- cCGUCGCGAcuuUCGCgGCCagUUUGCUc- -3'
miRNA:   3'- cGCAGCGCU---AGCGaCGGa-AGACGGcc -5'
27705 3' -57 NC_005882.1 + 27661 0.66 0.516314
Target:  5'- aCGcCGCGGcCGCgGCCUgcgucgccaUGCCGGc -3'
miRNA:   3'- cGCaGCGCUaGCGaCGGAag-------ACGGCC- -5'
27705 3' -57 NC_005882.1 + 27121 0.66 0.548445
Target:  5'- cGCGUCcuggGCGGccagcUCGUgaacgGCCUgaugCUGgCCGGg -3'
miRNA:   3'- -CGCAG----CGCU-----AGCGa----CGGAa---GAC-GGCC- -5'
27705 3' -57 NC_005882.1 + 26779 0.69 0.352799
Target:  5'- -gGUCGCGAcgcUCGCgGCCg---GCUGGg -3'
miRNA:   3'- cgCAGCGCU---AGCGaCGGaagaCGGCC- -5'
27705 3' -57 NC_005882.1 + 25827 0.68 0.388802
Target:  5'- gGCGUCGgcacacUGGUCGCUGCCggCauggacgcgaaggaaGCCGGc -3'
miRNA:   3'- -CGCAGC------GCUAGCGACGGaaGa--------------CGGCC- -5'
27705 3' -57 NC_005882.1 + 21996 0.67 0.484966
Target:  5'- cCGUCGCGAUCGUgcugcGCCagcUCaacgGCCGcGg -3'
miRNA:   3'- cGCAGCGCUAGCGa----CGGa--AGa---CGGC-C- -5'
27705 3' -57 NC_005882.1 + 19595 0.68 0.387895
Target:  5'- cGCGUCgGCGAgcuGCUGCUUga-GCUGGg -3'
miRNA:   3'- -CGCAG-CGCUag-CGACGGAagaCGGCC- -5'
27705 3' -57 NC_005882.1 + 18347 0.67 0.44465
Target:  5'- cGCGUCGCG-UCGCaagGCCggUCUGauGa -3'
miRNA:   3'- -CGCAGCGCuAGCGa--CGGa-AGACggCc -5'
27705 3' -57 NC_005882.1 + 18245 0.72 0.248221
Target:  5'- cGCGaucUUGCGcAUCGCgccaGCCUUCUgaugGCCGGc -3'
miRNA:   3'- -CGC---AGCGC-UAGCGa---CGGAAGA----CGGCC- -5'
27705 3' -57 NC_005882.1 + 17992 0.69 0.378909
Target:  5'- aCGUCGCGAccUCGC-GCag-CUcGCCGGu -3'
miRNA:   3'- cGCAGCGCU--AGCGaCGgaaGA-CGGCC- -5'
27705 3' -57 NC_005882.1 + 15924 0.67 0.494278
Target:  5'- cGCGUCGCGAUCuGCgacgaaagcgacuUGuCCggCUcGCCGa -3'
miRNA:   3'- -CGCAGCGCUAG-CG-------------AC-GGaaGA-CGGCc -5'
27705 3' -57 NC_005882.1 + 15729 0.7 0.296955
Target:  5'- gGCGUCGcCGuggCGCuUGCCgucgUCcugGCCGGu -3'
miRNA:   3'- -CGCAGC-GCua-GCG-ACGGa---AGa--CGGCC- -5'
27705 3' -57 NC_005882.1 + 15414 0.66 0.505769
Target:  5'- ----gGCGAUCuGCU-CCUgCUGCCGGa -3'
miRNA:   3'- cgcagCGCUAG-CGAcGGAaGACGGCC- -5'
27705 3' -57 NC_005882.1 + 13471 0.67 0.46458
Target:  5'- uGCGcCGCGaAUCGCUGCgCUgguaUCUGauuCUGGc -3'
miRNA:   3'- -CGCaGCGC-UAGCGACG-GA----AGAC---GGCC- -5'
27705 3' -57 NC_005882.1 + 13133 0.67 0.495318
Target:  5'- uGC-UCGCGA-CGUucaucgGCCUUCUGaUCGGg -3'
miRNA:   3'- -CGcAGCGCUaGCGa-----CGGAAGAC-GGCC- -5'
27705 3' -57 NC_005882.1 + 12575 0.69 0.351105
Target:  5'- gGCGgcuggCGCGGUCGCUuUCUUCggcggcuaucacGCCGGu -3'
miRNA:   3'- -CGCa----GCGCUAGCGAcGGAAGa-----------CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.