Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27705 | 3' | -57 | NC_005882.1 | + | 32126 | 0.67 | 0.46458 |
Target: 5'- cGUGccugCGCGAUCGUUGUg-UCggcGCCGGc -3' miRNA: 3'- -CGCa---GCGCUAGCGACGgaAGa--CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 30076 | 0.67 | 0.44465 |
Target: 5'- --uUCGCGGUgcCGCcGCC-UUUGCCGGc -3' miRNA: 3'- cgcAGCGCUA--GCGaCGGaAGACGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 35885 | 0.67 | 0.44465 |
Target: 5'- aGCGaUCGCGA-CGCUGaccgcaacacucCCUUUUGCacaGGa -3' miRNA: 3'- -CGC-AGCGCUaGCGAC------------GGAAGACGg--CC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 19595 | 0.68 | 0.387895 |
Target: 5'- cGCGUCgGCGAgcuGCUGCUUga-GCUGGg -3' miRNA: 3'- -CGCAG-CGCUag-CGACGGAagaCGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 17992 | 0.69 | 0.378909 |
Target: 5'- aCGUCGCGAccUCGC-GCag-CUcGCCGGu -3' miRNA: 3'- cGCAGCGCU--AGCGaCGgaaGA-CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 15729 | 0.7 | 0.296955 |
Target: 5'- gGCGUCGcCGuggCGCuUGCCgucgUCcugGCCGGu -3' miRNA: 3'- -CGCAGC-GCua-GCG-ACGGa---AGa--CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 18245 | 0.72 | 0.248221 |
Target: 5'- cGCGaucUUGCGcAUCGCgccaGCCUUCUgaugGCCGGc -3' miRNA: 3'- -CGC---AGCGC-UAGCGa---CGGAAGA----CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 3623 | 0.66 | 0.544122 |
Target: 5'- cGCGaCGCGAUCG-UGCCgaaacggugucgCUGCUGu -3' miRNA: 3'- -CGCaGCGCUAGCgACGGaa----------GACGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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