Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27705 | 3' | -57 | NC_005882.1 | + | 17992 | 0.69 | 0.378909 |
Target: 5'- aCGUCGCGAccUCGC-GCag-CUcGCCGGu -3' miRNA: 3'- cGCAGCGCU--AGCGaCGgaaGA-CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 26779 | 0.69 | 0.352799 |
Target: 5'- -gGUCGCGAcgcUCGCgGCCg---GCUGGg -3' miRNA: 3'- cgCAGCGCU---AGCGaCGGaagaCGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 12575 | 0.69 | 0.351105 |
Target: 5'- gGCGgcuggCGCGGUCGCUuUCUUCggcggcuaucacGCCGGu -3' miRNA: 3'- -CGCa----GCGCUAGCGAcGGAAGa-----------CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 8154 | 0.69 | 0.344384 |
Target: 5'- cCGUCGCG-UCGCgGCCg---GUCGGg -3' miRNA: 3'- cGCAGCGCuAGCGaCGGaagaCGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 15729 | 0.7 | 0.296955 |
Target: 5'- gGCGUCGcCGuggCGCuUGCCgucgUCcugGCCGGu -3' miRNA: 3'- -CGCAGC-GCua-GCG-ACGGa---AGa--CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 18245 | 0.72 | 0.248221 |
Target: 5'- cGCGaucUUGCGcAUCGCgccaGCCUUCUgaugGCCGGc -3' miRNA: 3'- -CGC---AGCGC-UAGCGa---CGGAAGA----CGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 6372 | 0.72 | 0.223459 |
Target: 5'- cGCGUCGUaGAUCGCaccuuuuuUGCCgug-GCCGGc -3' miRNA: 3'- -CGCAGCG-CUAGCG--------ACGGaagaCGGCC- -5' |
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27705 | 3' | -57 | NC_005882.1 | + | 35836 | 1.13 | 0.000247 |
Target: 5'- aGCGUCGCGAUCGCUGCCUUCUGCCGGa -3' miRNA: 3'- -CGCAGCGCUAGCGACGGAAGACGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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