miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27705 5' -50.5 NC_005882.1 + 12301 0.66 0.861072
Target:  5'- gGCCuGGGcUGG-GUCUaucGCGAUCAGCGc -3'
miRNA:   3'- -CGG-CUU-ACCuUAGAgu-CGCUAGUCGU- -5'
27705 5' -50.5 NC_005882.1 + 11076 0.66 0.823902
Target:  5'- uGCgGGcgAUGGGAUacgCGGaCGAUCAGCu -3'
miRNA:   3'- -CGgCU--UACCUUAga-GUC-GCUAGUCGu -5'
27705 5' -50.5 NC_005882.1 + 22086 0.67 0.814005
Target:  5'- cGCCGGAcUGcaaaaagCUCgcGGCGGUCAGCGa -3'
miRNA:   3'- -CGGCUU-ACcuua---GAG--UCGCUAGUCGU- -5'
27705 5' -50.5 NC_005882.1 + 8166 0.67 0.803889
Target:  5'- gGCCGGucGGGAUgUCGaUGAUCAGCc -3'
miRNA:   3'- -CGGCUuaCCUUAgAGUcGCUAGUCGu -5'
27705 5' -50.5 NC_005882.1 + 20043 0.67 0.783054
Target:  5'- uGCUGAc--GAAUCUC-GCGAUCGGUu -3'
miRNA:   3'- -CGGCUuacCUUAGAGuCGCUAGUCGu -5'
27705 5' -50.5 NC_005882.1 + 9774 0.68 0.728074
Target:  5'- aGCCGGcccGGAuaUUCaccgAGCGAUCAGCGa -3'
miRNA:   3'- -CGGCUua-CCUuaGAG----UCGCUAGUCGU- -5'
27705 5' -50.5 NC_005882.1 + 8277 0.69 0.701757
Target:  5'- gGCCuGAcUGGAaccauuuguagagaGUC-CAGUGAUCGGCGa -3'
miRNA:   3'- -CGG-CUuACCU--------------UAGaGUCGCUAGUCGU- -5'
27705 5' -50.5 NC_005882.1 + 24045 0.69 0.693659
Target:  5'- gGCCGAGcacaaGGcgCUCGGCauGAUCGGCAa -3'
miRNA:   3'- -CGGCUUac---CUuaGAGUCG--CUAGUCGU- -5'
27705 5' -50.5 NC_005882.1 + 19003 0.7 0.596335
Target:  5'- cGCCGGcGUGGGGcugggucgcuucucUCUCGGCG-UCGGCc -3'
miRNA:   3'- -CGGCU-UACCUU--------------AGAGUCGCuAGUCGu -5'
27705 5' -50.5 NC_005882.1 + 1772 0.72 0.519127
Target:  5'- cGCUGAcgGGA--UUCGGCGuauUCAGCGu -3'
miRNA:   3'- -CGGCUuaCCUuaGAGUCGCu--AGUCGU- -5'
27705 5' -50.5 NC_005882.1 + 24826 0.75 0.373642
Target:  5'- cGCCGGAaaugcGGGcgCcCAGCGAUCAGCc -3'
miRNA:   3'- -CGGCUUa----CCUuaGaGUCGCUAGUCGu -5'
27705 5' -50.5 NC_005882.1 + 22476 0.77 0.258394
Target:  5'- cGCCGugaagGGAGUCUgAGCGAUggCGGCAa -3'
miRNA:   3'- -CGGCuua--CCUUAGAgUCGCUA--GUCGU- -5'
27705 5' -50.5 NC_005882.1 + 35870 1.12 0.001142
Target:  5'- cGCCGAAUGGAAUCUCAGCGAUCAGCAu -3'
miRNA:   3'- -CGGCUUACCUUAGAGUCGCUAGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.