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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27706 | 5' | -53.5 | NC_005883.1 | + | 252 | 1.08 | 0.000038 |
Target: 5'- cGCCUCCCUCCUACCACAUACUGCUAAc -3' miRNA: 3'- -CGGAGGGAGGAUGGUGUAUGACGAUU- -5' |
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27706 | 5' | -53.5 | NC_005883.1 | + | 1178 | 0.66 | 0.13955 |
Target: 5'- gGCCUCCgaguCUCUUGuCCACAguaucccgcagugUGCUGCUu- -3' miRNA: 3'- -CGGAGG----GAGGAU-GGUGU-------------AUGACGAuu -5' |
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27706 | 5' | -53.5 | NC_005883.1 | + | 2705 | 0.72 | 0.050357 |
Target: 5'- uGCC-CCC-CCUACCugGUACUGaCUu- -3' miRNA: 3'- -CGGaGGGaGGAUGGugUAUGAC-GAuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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