miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2771 3' -59.3 NC_001491.2 + 144447 0.66 0.801945
Target:  5'- gCCGCUUCUcuacccuggaaaaGCAGAGGCggaaaagauguugagUUggaGCGGAgCCg -3'
miRNA:   3'- -GGCGAGGA-------------CGUCUCCG---------------AG---UGCCUgGG- -5'
2771 3' -59.3 NC_001491.2 + 145118 0.66 0.79934
Target:  5'- aUGCUCCggaccCGGGGuGC-CGgGGACCCu -3'
miRNA:   3'- gGCGAGGac---GUCUC-CGaGUgCCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 114721 0.66 0.79934
Target:  5'- gCGCgUCCUGCccgacuacGAcGGCUgcaaggacaUGCGGGCCCa -3'
miRNA:   3'- gGCG-AGGACGu-------CU-CCGA---------GUGCCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 42534 0.66 0.790566
Target:  5'- gCCGCagCCUGgGcGGGCUCuguaGGGCuCCa -3'
miRNA:   3'- -GGCGa-GGACgUcUCCGAGug--CCUG-GG- -5'
2771 3' -59.3 NC_001491.2 + 148867 0.66 0.790566
Target:  5'- -gGCUCCgGCAGGcacaGCUC-CGuGGCCCc -3'
miRNA:   3'- ggCGAGGaCGUCUc---CGAGuGC-CUGGG- -5'
2771 3' -59.3 NC_001491.2 + 114579 0.66 0.772623
Target:  5'- cCCGUguaccucgCCUGCGGccGGCgcggcgCugGGGCCg -3'
miRNA:   3'- -GGCGa-------GGACGUCu-CCGa-----GugCCUGGg -5'
2771 3' -59.3 NC_001491.2 + 13055 0.66 0.772623
Target:  5'- gCGCUUUUGCuG-GGCUUugGcGGCCa -3'
miRNA:   3'- gGCGAGGACGuCuCCGAGugC-CUGGg -5'
2771 3' -59.3 NC_001491.2 + 116345 0.66 0.771713
Target:  5'- gCCGCUggUGCgcuacaacgccgaGGGGGC-C-CGGGCCCg -3'
miRNA:   3'- -GGCGAggACG-------------UCUCCGaGuGCCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 47593 0.66 0.76347
Target:  5'- gCCGC-CCUGU-GAGGaUCGCGG-CCg -3'
miRNA:   3'- -GGCGaGGACGuCUCCgAGUGCCuGGg -5'
2771 3' -59.3 NC_001491.2 + 102986 0.67 0.735385
Target:  5'- cCCGCUUUUGCAGcuccucgauAGGag-GCGGGCUCg -3'
miRNA:   3'- -GGCGAGGACGUC---------UCCgagUGCCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 86768 0.67 0.735385
Target:  5'- aCCGCuUCCgggGUuaguuggcgguuGGGGGacgaCGCGGACCCc -3'
miRNA:   3'- -GGCG-AGGa--CG------------UCUCCga--GUGCCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 146621 0.67 0.735385
Target:  5'- aCGCcCCgccGCGGAGGCgCAggaGGGCCUc -3'
miRNA:   3'- gGCGaGGa--CGUCUCCGaGUg--CCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 85530 0.67 0.725843
Target:  5'- gCCGCUguuaacaaaUCUGCcagaaucuGGGGGCUC-CaGGCCCa -3'
miRNA:   3'- -GGCGA---------GGACG--------UCUCCGAGuGcCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 85416 0.67 0.716225
Target:  5'- cCCGCgggcacCCUGuCGGAGGC---CGGACgCCa -3'
miRNA:   3'- -GGCGa-----GGAC-GUCUCCGaguGCCUG-GG- -5'
2771 3' -59.3 NC_001491.2 + 140132 0.67 0.706539
Target:  5'- gCGCgCCgugucgGCGGAGGCa-GCGGACgCg -3'
miRNA:   3'- gGCGaGGa-----CGUCUCCGagUGCCUGgG- -5'
2771 3' -59.3 NC_001491.2 + 40319 0.68 0.686998
Target:  5'- uCUGUUUCUGCAGAuccugauGCgCGCGGGCCa -3'
miRNA:   3'- -GGCGAGGACGUCUc------CGaGUGCCUGGg -5'
2771 3' -59.3 NC_001491.2 + 137748 0.68 0.677159
Target:  5'- cCCGC-CCggcggGCGGcGGGCgccCGCGGGuCCCc -3'
miRNA:   3'- -GGCGaGGa----CGUC-UCCGa--GUGCCU-GGG- -5'
2771 3' -59.3 NC_001491.2 + 147354 0.68 0.64548
Target:  5'- gCCGCUCUUGCcccuGGGGCgcccguggauggCACGGucgUCCg -3'
miRNA:   3'- -GGCGAGGACGu---CUCCGa-----------GUGCCu--GGG- -5'
2771 3' -59.3 NC_001491.2 + 146907 0.69 0.617667
Target:  5'- aCGgUCCagGCcGAGGC-C-CGGGCCCg -3'
miRNA:   3'- gGCgAGGa-CGuCUCCGaGuGCCUGGG- -5'
2771 3' -59.3 NC_001491.2 + 1291 0.69 0.601801
Target:  5'- aCGCUggCUGCGGggggagaugggggccAGGCUCucucucgggcGCGGGCCCg -3'
miRNA:   3'- gGCGAg-GACGUC---------------UCCGAG----------UGCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.