miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27715 3' -55.5 NC_005884.1 + 34765 0.67 0.582063
Target:  5'- uUGGgc-GGCUGCuCCAUAgGCCUUUCCa -3'
miRNA:   3'- -ACUaauCCGAUGcGGUGU-CGGAGGGG- -5'
27715 3' -55.5 NC_005884.1 + 526 0.67 0.582063
Target:  5'- ----cAGGCUGCGCCAgCAaaCCUUCCg -3'
miRNA:   3'- acuaaUCCGAUGCGGU-GUc-GGAGGGg -5'
27715 3' -55.5 NC_005884.1 + 1659 0.68 0.483431
Target:  5'- cUGGUggAGGCUAgGCCAguaacucUAGUCuacuUCCCCa -3'
miRNA:   3'- -ACUAa-UCCGAUgCGGU-------GUCGG----AGGGG- -5'
27715 3' -55.5 NC_005884.1 + 4054 0.68 0.505568
Target:  5'- ----aAGGCUGCGU--CAGCCUCCa- -3'
miRNA:   3'- acuaaUCCGAUGCGguGUCGGAGGgg -5'
27715 3' -55.5 NC_005884.1 + 41123 0.73 0.238918
Target:  5'- cGA-UAGGCUagaauccgGCGCCuggcaAGCUUCCCCa -3'
miRNA:   3'- aCUaAUCCGA--------UGCGGug---UCGGAGGGG- -5'
27715 3' -55.5 NC_005884.1 + 7273 1.11 0.000444
Target:  5'- aUGAUUAGGCUACGCCACAGCCUCCCCc -3'
miRNA:   3'- -ACUAAUCCGAUGCGGUGUCGGAGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.