miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2772 5' -51.3 NC_001491.2 + 137606 0.66 0.987777
Target:  5'- aGCGGCCGCCc--CGgGGCGg----- -3'
miRNA:   3'- gCGUCGGCGGuuuGUgCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 17670 0.66 0.987777
Target:  5'- --uGGCCGCCGuacAGCGCGGCc------ -3'
miRNA:   3'- gcgUCGGCGGU---UUGUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 55895 0.66 0.987619
Target:  5'- uCGCAGCCuCgCAAGCGCgggugagguugggGGCAUUAg-- -3'
miRNA:   3'- -GCGUCGGcG-GUUUGUG-------------CCGUAAUaua -5'
2772 5' -51.3 NC_001491.2 + 13232 0.66 0.986123
Target:  5'- gGguGCCGCUAAACGCgaGGCc------ -3'
miRNA:   3'- gCguCGGCGGUUUGUG--CCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 147050 0.66 0.986123
Target:  5'- cCGCGGCCGCgGAGC-CGGa------- -3'
miRNA:   3'- -GCGUCGGCGgUUUGuGCCguaauaua -5'
2772 5' -51.3 NC_001491.2 + 97365 0.66 0.986123
Target:  5'- -aCAGCCGCgGucuGCGCGGCGc----- -3'
miRNA:   3'- gcGUCGGCGgUu--UGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 23355 0.66 0.984302
Target:  5'- uGCuuGCCGCCuuuGggUACGGCGUg---- -3'
miRNA:   3'- gCGu-CGGCGG---UuuGUGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 144870 0.66 0.983126
Target:  5'- gGCAGCCGCCGGgguaggaggaccgccGCugcCGGCGg----- -3'
miRNA:   3'- gCGUCGGCGGUU---------------UGu--GCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 136621 0.66 0.982306
Target:  5'- aGaCuGCCGCCGGGCA-GGCAaUGUGc -3'
miRNA:   3'- gC-GuCGGCGGUUUGUgCCGUaAUAUa -5'
2772 5' -51.3 NC_001491.2 + 138018 0.66 0.982306
Target:  5'- uCGguGCCGgCGGugGCGGCu------ -3'
miRNA:   3'- -GCguCGGCgGUUugUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 118373 0.66 0.982306
Target:  5'- uCGCccucGGCCGCCGGcaGCGGCGg----- -3'
miRNA:   3'- -GCG----UCGGCGGUUugUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 20083 0.66 0.982306
Target:  5'- aCGCGGgaaCGCCcGGCACGGCu------ -3'
miRNA:   3'- -GCGUCg--GCGGuUUGUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 125091 0.66 0.980125
Target:  5'- gGgGGCCGCCAAcuccaGCGGCGa----- -3'
miRNA:   3'- gCgUCGGCGGUUug---UGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 14332 0.67 0.97517
Target:  5'- aGCuGCCGCUuGGCGCuGCcgUAUAg -3'
miRNA:   3'- gCGuCGGCGGuUUGUGcCGuaAUAUa -5'
2772 5' -51.3 NC_001491.2 + 136939 0.67 0.97517
Target:  5'- uGCGGCUGCCAuugcugcaGACACccaGGCAUc---- -3'
miRNA:   3'- gCGUCGGCGGU--------UUGUG---CCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 19223 0.67 0.97517
Target:  5'- aCGUAGCCuG-CAAAUACGGUGUUAa-- -3'
miRNA:   3'- -GCGUCGG-CgGUUUGUGCCGUAAUaua -5'
2772 5' -51.3 NC_001491.2 + 65644 0.67 0.97238
Target:  5'- gCGCAGCC-CCAAGCcgcacCGGCGgggcUAUAc -3'
miRNA:   3'- -GCGUCGGcGGUUUGu----GCCGUa---AUAUa -5'
2772 5' -51.3 NC_001491.2 + 42087 0.67 0.96937
Target:  5'- cCGCAGCgGCUAuAC-CGGCAa----- -3'
miRNA:   3'- -GCGUCGgCGGUuUGuGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 148582 0.67 0.966134
Target:  5'- gCGCGGUgGCUcuGCGCGGCGc----- -3'
miRNA:   3'- -GCGUCGgCGGuuUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 61553 0.68 0.962664
Target:  5'- uGgAGCCGCCGAcagaACGGCAa----- -3'
miRNA:   3'- gCgUCGGCGGUUug--UGCCGUaauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.