Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2772 | 5' | -51.3 | NC_001491.2 | + | 139713 | 0.74 | 0.724698 |
Target: 5'- aCGCAGCCGCC----GCGGCGUa---- -3' miRNA: 3'- -GCGUCGGCGGuuugUGCCGUAauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 19610 | 0.72 | 0.822355 |
Target: 5'- gCGCaAGCUGCCGGGC-CGGCAUc---- -3' miRNA: 3'- -GCG-UCGGCGGUUUGuGCCGUAauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 131113 | 0.71 | 0.856635 |
Target: 5'- gCGCuGuuGgcCCGGACACGGUAUUGUGg -3' miRNA: 3'- -GCGuCggC--GGUUUGUGCCGUAAUAUa -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 137626 | 0.7 | 0.894404 |
Target: 5'- cCGaCGGCCGCCGc-CGCGGCAg----- -3' miRNA: 3'- -GC-GUCGGCGGUuuGUGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 97566 | 0.7 | 0.903872 |
Target: 5'- aCGUGGUCGCCAccgccuucacccgcaGACGCGGCGg----- -3' miRNA: 3'- -GCGUCGGCGGU---------------UUGUGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 85998 | 0.7 | 0.894404 |
Target: 5'- gGCAGCggCGUCAAACGCGGCc------ -3' miRNA: 3'- gCGUCG--GCGGUUUGUGCCGuaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 49472 | 0.7 | 0.907775 |
Target: 5'- cCGgGGCCGucCCGGACGCGGCGc----- -3' miRNA: 3'- -GCgUCGGC--GGUUUGUGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 146506 | 0.69 | 0.936629 |
Target: 5'- aGCGGCCGCgGc-CGCGGCAg----- -3' miRNA: 3'- gCGUCGGCGgUuuGUGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 127553 | 0.69 | 0.94161 |
Target: 5'- aGCAGCUccucgGCCGAugggcgcauCGCGGCAUUGa-- -3' miRNA: 3'- gCGUCGG-----CGGUUu--------GUGCCGUAAUaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 50328 | 0.69 | 0.925878 |
Target: 5'- cCGCAGUCGCCGGcgaGCGGCu------ -3' miRNA: 3'- -GCGUCGGCGGUUug-UGCCGuaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 50732 | 0.69 | 0.914072 |
Target: 5'- uGCGGCCGUCAAACAUaguuGCAgagcgUGUGUu -3' miRNA: 3'- gCGUCGGCGGUUUGUGc---CGUa----AUAUA- -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 125599 | 0.69 | 0.914072 |
Target: 5'- gGCGGCCGCUgc-CGCGGCGg----- -3' miRNA: 3'- gCGUCGGCGGuuuGUGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 61553 | 0.68 | 0.962664 |
Target: 5'- uGgAGCCGCCGAcagaACGGCAa----- -3' miRNA: 3'- gCgUCGGCGGUUug--UGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 123290 | 0.68 | 0.954997 |
Target: 5'- uGCGGCCGCU-GACuCGGCGUg---- -3' miRNA: 3'- gCGUCGGCGGuUUGuGCCGUAauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 118335 | 0.68 | 0.946329 |
Target: 5'- gGCGGCUGCCGcccAGC-CGGCGUc---- -3' miRNA: 3'- gCGUCGGCGGU---UUGuGCCGUAauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 86697 | 0.68 | 0.946329 |
Target: 5'- gGCGGCgGCCAucAUGCGGCAc----- -3' miRNA: 3'- gCGUCGgCGGUu-UGUGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 51244 | 0.68 | 0.950791 |
Target: 5'- gGCGGCUGCCGccAGCACGGa------- -3' miRNA: 3'- gCGUCGGCGGU--UUGUGCCguaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 64116 | 0.68 | 0.958953 |
Target: 5'- aCGCAGCUaCCAGGC-CGGCGa----- -3' miRNA: 3'- -GCGUCGGcGGUUUGuGCCGUaauaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 19223 | 0.67 | 0.97517 |
Target: 5'- aCGUAGCCuG-CAAAUACGGUGUUAa-- -3' miRNA: 3'- -GCGUCGG-CgGUUUGUGCCGUAAUaua -5' |
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2772 | 5' | -51.3 | NC_001491.2 | + | 136939 | 0.67 | 0.97517 |
Target: 5'- uGCGGCUGCCAuugcugcaGACACccaGGCAUc---- -3' miRNA: 3'- gCGUCGGCGGU--------UUGUG---CCGUAauaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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