miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2772 5' -51.3 NC_001491.2 + 139713 0.74 0.724698
Target:  5'- aCGCAGCCGCC----GCGGCGUa---- -3'
miRNA:   3'- -GCGUCGGCGGuuugUGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 19610 0.72 0.822355
Target:  5'- gCGCaAGCUGCCGGGC-CGGCAUc---- -3'
miRNA:   3'- -GCG-UCGGCGGUUUGuGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 131113 0.71 0.856635
Target:  5'- gCGCuGuuGgcCCGGACACGGUAUUGUGg -3'
miRNA:   3'- -GCGuCggC--GGUUUGUGCCGUAAUAUa -5'
2772 5' -51.3 NC_001491.2 + 85998 0.7 0.894404
Target:  5'- gGCAGCggCGUCAAACGCGGCc------ -3'
miRNA:   3'- gCGUCG--GCGGUUUGUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 137626 0.7 0.894404
Target:  5'- cCGaCGGCCGCCGc-CGCGGCAg----- -3'
miRNA:   3'- -GC-GUCGGCGGUuuGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 97566 0.7 0.903872
Target:  5'- aCGUGGUCGCCAccgccuucacccgcaGACGCGGCGg----- -3'
miRNA:   3'- -GCGUCGGCGGU---------------UUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 49472 0.7 0.907775
Target:  5'- cCGgGGCCGucCCGGACGCGGCGc----- -3'
miRNA:   3'- -GCgUCGGC--GGUUUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 50732 0.69 0.914072
Target:  5'- uGCGGCCGUCAAACAUaguuGCAgagcgUGUGUu -3'
miRNA:   3'- gCGUCGGCGGUUUGUGc---CGUa----AUAUA- -5'
2772 5' -51.3 NC_001491.2 + 125599 0.69 0.914072
Target:  5'- gGCGGCCGCUgc-CGCGGCGg----- -3'
miRNA:   3'- gCGUCGGCGGuuuGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 50328 0.69 0.925878
Target:  5'- cCGCAGUCGCCGGcgaGCGGCu------ -3'
miRNA:   3'- -GCGUCGGCGGUUug-UGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 146506 0.69 0.936629
Target:  5'- aGCGGCCGCgGc-CGCGGCAg----- -3'
miRNA:   3'- gCGUCGGCGgUuuGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 127553 0.69 0.94161
Target:  5'- aGCAGCUccucgGCCGAugggcgcauCGCGGCAUUGa-- -3'
miRNA:   3'- gCGUCGG-----CGGUUu--------GUGCCGUAAUaua -5'
2772 5' -51.3 NC_001491.2 + 118335 0.68 0.946329
Target:  5'- gGCGGCUGCCGcccAGC-CGGCGUc---- -3'
miRNA:   3'- gCGUCGGCGGU---UUGuGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 86697 0.68 0.946329
Target:  5'- gGCGGCgGCCAucAUGCGGCAc----- -3'
miRNA:   3'- gCGUCGgCGGUu-UGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 51244 0.68 0.950791
Target:  5'- gGCGGCUGCCGccAGCACGGa------- -3'
miRNA:   3'- gCGUCGGCGGU--UUGUGCCguaauaua -5'
2772 5' -51.3 NC_001491.2 + 123290 0.68 0.954997
Target:  5'- uGCGGCCGCU-GACuCGGCGUg---- -3'
miRNA:   3'- gCGUCGGCGGuUUGuGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 64116 0.68 0.958953
Target:  5'- aCGCAGCUaCCAGGC-CGGCGa----- -3'
miRNA:   3'- -GCGUCGGcGGUUUGuGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 61553 0.68 0.962664
Target:  5'- uGgAGCCGCCGAcagaACGGCAa----- -3'
miRNA:   3'- gCgUCGGCGGUUug--UGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 148582 0.67 0.966134
Target:  5'- gCGCGGUgGCUcuGCGCGGCGc----- -3'
miRNA:   3'- -GCGUCGgCGGuuUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 42087 0.67 0.96937
Target:  5'- cCGCAGCgGCUAuAC-CGGCAa----- -3'
miRNA:   3'- -GCGUCGgCGGUuUGuGCCGUaauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.