miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2772 5' -51.3 NC_001491.2 + 13232 0.66 0.986123
Target:  5'- gGguGCCGCUAAACGCgaGGCc------ -3'
miRNA:   3'- gCguCGGCGGUUUGUG--CCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 14332 0.67 0.97517
Target:  5'- aGCuGCCGCUuGGCGCuGCcgUAUAg -3'
miRNA:   3'- gCGuCGGCGGuUUGUGcCGuaAUAUa -5'
2772 5' -51.3 NC_001491.2 + 17670 0.66 0.987777
Target:  5'- --uGGCCGCCGuacAGCGCGGCc------ -3'
miRNA:   3'- gcgUCGGCGGU---UUGUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 19223 0.67 0.97517
Target:  5'- aCGUAGCCuG-CAAAUACGGUGUUAa-- -3'
miRNA:   3'- -GCGUCGG-CgGUUUGUGCCGUAAUaua -5'
2772 5' -51.3 NC_001491.2 + 19610 0.72 0.822355
Target:  5'- gCGCaAGCUGCCGGGC-CGGCAUc---- -3'
miRNA:   3'- -GCG-UCGGCGGUUUGuGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 20083 0.66 0.982306
Target:  5'- aCGCGGgaaCGCCcGGCACGGCu------ -3'
miRNA:   3'- -GCGUCg--GCGGuUUGUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 23355 0.66 0.984302
Target:  5'- uGCuuGCCGCCuuuGggUACGGCGUg---- -3'
miRNA:   3'- gCGu-CGGCGG---UuuGUGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 42087 0.67 0.96937
Target:  5'- cCGCAGCgGCUAuAC-CGGCAa----- -3'
miRNA:   3'- -GCGUCGgCGGUuUGuGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 49472 0.7 0.907775
Target:  5'- cCGgGGCCGucCCGGACGCGGCGc----- -3'
miRNA:   3'- -GCgUCGGC--GGUUUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 50328 0.69 0.925878
Target:  5'- cCGCAGUCGCCGGcgaGCGGCu------ -3'
miRNA:   3'- -GCGUCGGCGGUUug-UGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 50732 0.69 0.914072
Target:  5'- uGCGGCCGUCAAACAUaguuGCAgagcgUGUGUu -3'
miRNA:   3'- gCGUCGGCGGUUUGUGc---CGUa----AUAUA- -5'
2772 5' -51.3 NC_001491.2 + 51244 0.68 0.950791
Target:  5'- gGCGGCUGCCGccAGCACGGa------- -3'
miRNA:   3'- gCGUCGGCGGU--UUGUGCCguaauaua -5'
2772 5' -51.3 NC_001491.2 + 55895 0.66 0.987619
Target:  5'- uCGCAGCCuCgCAAGCGCgggugagguugggGGCAUUAg-- -3'
miRNA:   3'- -GCGUCGGcG-GUUUGUG-------------CCGUAAUaua -5'
2772 5' -51.3 NC_001491.2 + 61553 0.68 0.962664
Target:  5'- uGgAGCCGCCGAcagaACGGCAa----- -3'
miRNA:   3'- gCgUCGGCGGUUug--UGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 64116 0.68 0.958953
Target:  5'- aCGCAGCUaCCAGGC-CGGCGa----- -3'
miRNA:   3'- -GCGUCGGcGGUUUGuGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 65644 0.67 0.97238
Target:  5'- gCGCAGCC-CCAAGCcgcacCGGCGgggcUAUAc -3'
miRNA:   3'- -GCGUCGGcGGUUUGu----GCCGUa---AUAUa -5'
2772 5' -51.3 NC_001491.2 + 85998 0.7 0.894404
Target:  5'- gGCAGCggCGUCAAACGCGGCc------ -3'
miRNA:   3'- gCGUCG--GCGGUUUGUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 86697 0.68 0.946329
Target:  5'- gGCGGCgGCCAucAUGCGGCAc----- -3'
miRNA:   3'- gCGUCGgCGGUu-UGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 97365 0.66 0.986123
Target:  5'- -aCAGCCGCgGucuGCGCGGCGc----- -3'
miRNA:   3'- gcGUCGGCGgUu--UGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 97566 0.7 0.903872
Target:  5'- aCGUGGUCGCCAccgccuucacccgcaGACGCGGCGg----- -3'
miRNA:   3'- -GCGUCGGCGGU---------------UUGUGCCGUaauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.