miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2772 5' -51.3 NC_001491.2 + 148582 0.67 0.966134
Target:  5'- gCGCGGUgGCUcuGCGCGGCGc----- -3'
miRNA:   3'- -GCGUCGgCGGuuUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 147050 0.66 0.986123
Target:  5'- cCGCGGCCGCgGAGC-CGGa------- -3'
miRNA:   3'- -GCGUCGGCGgUUUGuGCCguaauaua -5'
2772 5' -51.3 NC_001491.2 + 146506 0.69 0.936629
Target:  5'- aGCGGCCGCgGc-CGCGGCAg----- -3'
miRNA:   3'- gCGUCGGCGgUuuGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 144870 0.66 0.983126
Target:  5'- gGCAGCCGCCGGgguaggaggaccgccGCugcCGGCGg----- -3'
miRNA:   3'- gCGUCGGCGGUU---------------UGu--GCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 139713 0.74 0.724698
Target:  5'- aCGCAGCCGCC----GCGGCGUa---- -3'
miRNA:   3'- -GCGUCGGCGGuuugUGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 138018 0.66 0.982306
Target:  5'- uCGguGCCGgCGGugGCGGCu------ -3'
miRNA:   3'- -GCguCGGCgGUUugUGCCGuaauaua -5'
2772 5' -51.3 NC_001491.2 + 137626 0.7 0.894404
Target:  5'- cCGaCGGCCGCCGc-CGCGGCAg----- -3'
miRNA:   3'- -GC-GUCGGCGGUuuGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 137606 0.66 0.987777
Target:  5'- aGCGGCCGCCc--CGgGGCGg----- -3'
miRNA:   3'- gCGUCGGCGGuuuGUgCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 136939 0.67 0.97517
Target:  5'- uGCGGCUGCCAuugcugcaGACACccaGGCAUc---- -3'
miRNA:   3'- gCGUCGGCGGU--------UUGUG---CCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 136621 0.66 0.982306
Target:  5'- aGaCuGCCGCCGGGCA-GGCAaUGUGc -3'
miRNA:   3'- gC-GuCGGCGGUUUGUgCCGUaAUAUa -5'
2772 5' -51.3 NC_001491.2 + 131113 0.71 0.856635
Target:  5'- gCGCuGuuGgcCCGGACACGGUAUUGUGg -3'
miRNA:   3'- -GCGuCggC--GGUUUGUGCCGUAAUAUa -5'
2772 5' -51.3 NC_001491.2 + 127553 0.69 0.94161
Target:  5'- aGCAGCUccucgGCCGAugggcgcauCGCGGCAUUGa-- -3'
miRNA:   3'- gCGUCGG-----CGGUUu--------GUGCCGUAAUaua -5'
2772 5' -51.3 NC_001491.2 + 125599 0.69 0.914072
Target:  5'- gGCGGCCGCUgc-CGCGGCGg----- -3'
miRNA:   3'- gCGUCGGCGGuuuGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 125091 0.66 0.980125
Target:  5'- gGgGGCCGCCAAcuccaGCGGCGa----- -3'
miRNA:   3'- gCgUCGGCGGUUug---UGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 123290 0.68 0.954997
Target:  5'- uGCGGCCGCU-GACuCGGCGUg---- -3'
miRNA:   3'- gCGUCGGCGGuUUGuGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 118373 0.66 0.982306
Target:  5'- uCGCccucGGCCGCCGGcaGCGGCGg----- -3'
miRNA:   3'- -GCG----UCGGCGGUUugUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 118335 0.68 0.946329
Target:  5'- gGCGGCUGCCGcccAGC-CGGCGUc---- -3'
miRNA:   3'- gCGUCGGCGGU---UUGuGCCGUAauaua -5'
2772 5' -51.3 NC_001491.2 + 97566 0.7 0.903872
Target:  5'- aCGUGGUCGCCAccgccuucacccgcaGACGCGGCGg----- -3'
miRNA:   3'- -GCGUCGGCGGU---------------UUGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 97365 0.66 0.986123
Target:  5'- -aCAGCCGCgGucuGCGCGGCGc----- -3'
miRNA:   3'- gcGUCGGCGgUu--UGUGCCGUaauaua -5'
2772 5' -51.3 NC_001491.2 + 86697 0.68 0.946329
Target:  5'- gGCGGCgGCCAucAUGCGGCAc----- -3'
miRNA:   3'- gCGUCGgCGGUu-UGUGCCGUaauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.