miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27720 3' -49.5 NC_005884.1 + 16127 0.66 0.915588
Target:  5'- -gACGCUGUucggcgguuccaCCACUAGCUAGCUg- -3'
miRNA:   3'- agUGUGAUAug----------GGUGAUCGGUUGAgu -5'
27720 3' -49.5 NC_005884.1 + 21140 0.66 0.909448
Target:  5'- uUCAC-CUGUccgGCCCAuaugcugaucuucuCUAGCCuuaaGACUCAu -3'
miRNA:   3'- -AGUGuGAUA---UGGGU--------------GAUCGG----UUGAGU- -5'
27720 3' -49.5 NC_005884.1 + 30183 0.66 0.897162
Target:  5'- -aGCACUAUcaucaguguaACCCugaccCUGGCCAGCggUCAu -3'
miRNA:   3'- agUGUGAUA----------UGGGu----GAUCGGUUG--AGU- -5'
27720 3' -49.5 NC_005884.1 + 41950 0.69 0.787544
Target:  5'- aUAUGCgacUACCC-CUAGCCAACUgGa -3'
miRNA:   3'- aGUGUGau-AUGGGuGAUCGGUUGAgU- -5'
27720 3' -49.5 NC_005884.1 + 23684 1.1 0.002115
Target:  5'- gUCACACUAUACCCACUAGCCAACUCAg -3'
miRNA:   3'- -AGUGUGAUAUGGGUGAUCGGUUGAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.