miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27725 5' -50.3 NC_005884.1 + 43376 0.67 0.840222
Target:  5'- gGGCuagGUCAGaggaugggacuucGGCUUCuaaaUCAGCCAGGg -3'
miRNA:   3'- -CCGu--UAGUU-------------CCGAAGc---AGUCGGUUCg -5'
27725 5' -50.3 NC_005884.1 + 2905 0.67 0.859149
Target:  5'- uGGCuaAAUUguuGGCUUCuaGUCAGCCuAAGUu -3'
miRNA:   3'- -CCG--UUAGuu-CCGAAG--CAGUCGG-UUCG- -5'
27725 5' -50.3 NC_005884.1 + 41092 1.15 0.000952
Target:  5'- cGGCAAUCAAGGCUUCGUCAGCCAAGCc -3'
miRNA:   3'- -CCGUUAGUUCCGAAGCAGUCGGUUCG- -5'
27725 5' -50.3 NC_005884.1 + 4061 0.68 0.781615
Target:  5'- aGUAAUaAAGGCUgCGUCAGCCu--- -3'
miRNA:   3'- cCGUUAgUUCCGAaGCAGUCGGuucg -5'
27725 5' -50.3 NC_005884.1 + 41390 0.67 0.859149
Target:  5'- -uUAAUCAAGGCUaaaUCAGUCAAGg -3'
miRNA:   3'- ccGUUAGUUCCGAagcAGUCGGUUCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.