miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27726 3' -46.6 NC_005884.1 + 42427 1.07 0.006222
Target:  5'- aAUCUCCCUAGCCAGAAUCAAUAAACUg -3'
miRNA:   3'- -UAGAGGGAUCGGUCUUAGUUAUUUGA- -5'
27726 3' -46.6 NC_005884.1 + 20188 0.7 0.868707
Target:  5'- -gUUUCCUGGCCAcacuGAAUuCAGUAGACUc -3'
miRNA:   3'- uaGAGGGAUCGGU----CUUA-GUUAUUUGA- -5'
27726 3' -46.6 NC_005884.1 + 1304 0.68 0.935028
Target:  5'- -gUUCCCUGGCCAGGAcuagccuaaUCGAagAGAUUa -3'
miRNA:   3'- uaGAGGGAUCGGUCUU---------AGUUa-UUUGA- -5'
27726 3' -46.6 NC_005884.1 + 22302 0.67 0.964332
Target:  5'- -cCUCCUUGGUCAGAAUCccguuuaucguAGUGAAgUa -3'
miRNA:   3'- uaGAGGGAUCGGUCUUAG-----------UUAUUUgA- -5'
27726 3' -46.6 NC_005884.1 + 18424 0.66 0.971599
Target:  5'- -cUUCCCaggguuaucgUAGCCAGAuUCAAUAAGg- -3'
miRNA:   3'- uaGAGGG----------AUCGGUCUuAGUUAUUUga -5'
27726 3' -46.6 NC_005884.1 + 30102 0.66 0.971599
Target:  5'- ---aCCgCUGGCCAGggUCAGgguuACa -3'
miRNA:   3'- uagaGG-GAUCGGUCuuAGUUauu-UGa -5'
27726 3' -46.6 NC_005884.1 + 5747 0.66 0.977735
Target:  5'- uUCUCCgUAGCCuuGAGUCuGUAAc-- -3'
miRNA:   3'- uAGAGGgAUCGGu-CUUAGuUAUUuga -5'
27726 3' -46.6 NC_005884.1 + 42386 0.66 0.980151
Target:  5'- aAUCUCCCUaucuGGCCAGAcUgGAgauugaaaaggauUGGACUc -3'
miRNA:   3'- -UAGAGGGA----UCGGUCUuAgUU-------------AUUUGA- -5'
27726 3' -46.6 NC_005884.1 + 8199 0.66 0.980407
Target:  5'- gAUCUCCCUGGuCCGGc-UCAGgcAAUg -3'
miRNA:   3'- -UAGAGGGAUC-GGUCuuAGUUauUUGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.