miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27728 3' -40.6 NC_005884.1 + 32175 0.66 0.999991
Target:  5'- -----uAAGGCAGUGAAGAGacuCUUCCUg -3'
miRNA:   3'- uuuauuUUCCGUUAUUUUUU---GGGGGA- -5'
27728 3' -40.6 NC_005884.1 + 203 0.66 0.999991
Target:  5'- aAAGUAGgccGAGGUAGguuUAGGGguGGCCCCCc -3'
miRNA:   3'- -UUUAUU---UUCCGUU---AUUUU--UUGGGGGa -5'
27728 3' -40.6 NC_005884.1 + 34833 0.66 0.999987
Target:  5'- ---gGAAAGGCcuAUGGAGcAGCCgCCCa -3'
miRNA:   3'- uuuaUUUUCCGu-UAUUUU-UUGG-GGGa -5'
27728 3' -40.6 NC_005884.1 + 1422 0.66 0.999961
Target:  5'- aGAAUAAAAGG-AGUGAGcuuuauuAGCCUCCUc -3'
miRNA:   3'- -UUUAUUUUCCgUUAUUUu------UUGGGGGA- -5'
27728 3' -40.6 NC_005884.1 + 42407 0.67 0.999893
Target:  5'- cGGAUGAAAGGCuAGUcAGAuACCgCCa -3'
miRNA:   3'- -UUUAUUUUCCG-UUAuUUUuUGGgGGa -5'
27728 3' -40.6 NC_005884.1 + 20798 0.67 0.999893
Target:  5'- -----cGAGGCuuagAAGAAGCCCCa- -3'
miRNA:   3'- uuuauuUUCCGuua-UUUUUUGGGGga -5'
27728 3' -40.6 NC_005884.1 + 17117 0.67 0.999854
Target:  5'- -------uGGCAGUAAAAGAuagcUCCCCa -3'
miRNA:   3'- uuuauuuuCCGUUAUUUUUU----GGGGGa -5'
27728 3' -40.6 NC_005884.1 + 15237 0.69 0.999402
Target:  5'- -----uGGGGCAGUuugcGGAAUCCCCUu -3'
miRNA:   3'- uuuauuUUCCGUUAuu--UUUUGGGGGA- -5'
27728 3' -40.6 NC_005884.1 + 3265 0.7 0.997585
Target:  5'- uGAAUAAcuGGCAAUAAAAAGCCg--- -3'
miRNA:   3'- -UUUAUUuuCCGUUAUUUUUUGGggga -5'
27728 3' -40.6 NC_005884.1 + 16511 0.72 0.99099
Target:  5'- uGGAUGAAGucugcgccccuuuGGCAAUAuuGAGAGCCUCCa -3'
miRNA:   3'- -UUUAUUUU-------------CCGUUAU--UUUUUGGGGGa -5'
27728 3' -40.6 NC_005884.1 + 316 1.08 0.029278
Target:  5'- uAAAUAAAAGGCAAUAAAAAACCCCCUg -3'
miRNA:   3'- -UUUAUUUUCCGUUAUUUUUUGGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.