miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2773 3' -56.7 NC_001491.2 + 32164 0.66 0.853015
Target:  5'- uUUCUGGAUgUGGaucacGAGCUgaAACUGGGCGAc -3'
miRNA:   3'- -AGGACCUA-GCC-----CUCGG--UUGAUCCGUU- -5'
2773 3' -56.7 NC_001491.2 + 40306 0.66 0.844968
Target:  5'- aUCCUGauGcgCGcGGGCCAcCUGGGCAAc -3'
miRNA:   3'- -AGGAC--CuaGCcCUCGGUuGAUCCGUU- -5'
2773 3' -56.7 NC_001491.2 + 121369 0.66 0.836724
Target:  5'- -nCUGGGcCGGGGucGCCGgaGCUGGGCu- -3'
miRNA:   3'- agGACCUaGCCCU--CGGU--UGAUCCGuu -5'
2773 3' -56.7 NC_001491.2 + 1694 0.66 0.835888
Target:  5'- gUCCcgcgugaUGGAUCucaGGGAGCCggUagaAGGCAGg -3'
miRNA:   3'- -AGG-------ACCUAG---CCCUCGGuuGa--UCCGUU- -5'
2773 3' -56.7 NC_001491.2 + 121394 0.67 0.819669
Target:  5'- -gCUGGGcCGGGGucGCCGgaGCUGGGCu- -3'
miRNA:   3'- agGACCUaGCCCU--CGGU--UGAUCCGuu -5'
2773 3' -56.7 NC_001491.2 + 146379 0.71 0.591681
Target:  5'- gCCUGGGcCGGGuAGCCGGCcacGGCGg -3'
miRNA:   3'- aGGACCUaGCCC-UCGGUUGau-CCGUu -5'
2773 3' -56.7 NC_001491.2 + 141568 0.73 0.481541
Target:  5'- aCCUGGccCGGGGGCCAG--GGGCGu -3'
miRNA:   3'- aGGACCuaGCCCUCGGUUgaUCCGUu -5'
2773 3' -56.7 NC_001491.2 + 144897 0.74 0.408012
Target:  5'- -gCUGGGUgcCGGGGacGCCGGCUGGGCGg -3'
miRNA:   3'- agGACCUA--GCCCU--CGGUUGAUCCGUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.