miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2773 5' -60.5 NC_001491.2 + 30008 0.66 0.723258
Target:  5'- ----cCUCGCCAUaCCCCCG-CCGCa- -3'
miRNA:   3'- ugaauGAGCGGUG-GGGGGUgGGCGac -5'
2773 5' -60.5 NC_001491.2 + 130813 0.66 0.723258
Target:  5'- uCUgagAgUCGCCACCCCCaGCUCuaUGa -3'
miRNA:   3'- uGAa--UgAGCGGUGGGGGgUGGGcgAC- -5'
2773 5' -60.5 NC_001491.2 + 43045 0.66 0.723258
Target:  5'- cUUUGCg-GCCGCCgCCCGUCCGCUu -3'
miRNA:   3'- uGAAUGagCGGUGGgGGGUGGGCGAc -5'
2773 5' -60.5 NC_001491.2 + 31287 0.66 0.703824
Target:  5'- ------aCGCUGCCuCCCCGCCCGUc- -3'
miRNA:   3'- ugaaugaGCGGUGG-GGGGUGGGCGac -5'
2773 5' -60.5 NC_001491.2 + 114072 0.66 0.694017
Target:  5'- ---gACUC-CCG-CCUCCAUCCGCUGa -3'
miRNA:   3'- ugaaUGAGcGGUgGGGGGUGGGCGAC- -5'
2773 5' -60.5 NC_001491.2 + 124672 0.66 0.694017
Target:  5'- ---cAUUCGCCAagguuCCCCCCGCCauCGCc- -3'
miRNA:   3'- ugaaUGAGCGGU-----GGGGGGUGG--GCGac -5'
2773 5' -60.5 NC_001491.2 + 6353 0.66 0.694017
Target:  5'- gACUgGCUCGagcgcaaACCCCCCGacuCCCGCc- -3'
miRNA:   3'- -UGAaUGAGCgg-----UGGGGGGU---GGGCGac -5'
2773 5' -60.5 NC_001491.2 + 143790 0.66 0.694017
Target:  5'- cAUUUGCaugCGCUuuucGCCUCCCcCCCGCUc -3'
miRNA:   3'- -UGAAUGa--GCGG----UGGGGGGuGGGCGAc -5'
2773 5' -60.5 NC_001491.2 + 139873 0.66 0.68416
Target:  5'- cACgcgUUCGCCugCUCgCGCCCGCa- -3'
miRNA:   3'- -UGaauGAGCGGugGGGgGUGGGCGac -5'
2773 5' -60.5 NC_001491.2 + 98273 0.67 0.664332
Target:  5'- --gUAC-CGCC-CCCUCUACCCGUUu -3'
miRNA:   3'- ugaAUGaGCGGuGGGGGGUGGGCGAc -5'
2773 5' -60.5 NC_001491.2 + 147359 0.67 0.644405
Target:  5'- cGCUUGC-CGCUcuuGCCCCUggggCGCCCGUg- -3'
miRNA:   3'- -UGAAUGaGCGG---UGGGGG----GUGGGCGac -5'
2773 5' -60.5 NC_001491.2 + 117859 0.67 0.644405
Target:  5'- cGCUgggGC-CGCCACCCCgaagagCugCCGCUc -3'
miRNA:   3'- -UGAa--UGaGCGGUGGGGg-----GugGGCGAc -5'
2773 5' -60.5 NC_001491.2 + 122850 0.67 0.634424
Target:  5'- -aUUGCgCGCgGCCCUCCGCgaGCUGu -3'
miRNA:   3'- ugAAUGaGCGgUGGGGGGUGggCGAC- -5'
2773 5' -60.5 NC_001491.2 + 32265 0.67 0.634424
Target:  5'- ---aGCUCGCCAgCCUCa--CCGCUGu -3'
miRNA:   3'- ugaaUGAGCGGUgGGGGgugGGCGAC- -5'
2773 5' -60.5 NC_001491.2 + 116854 0.67 0.624441
Target:  5'- gACUcACUCGCCGCCguggccggcuaCCCgGCCCaggccgccGCUGc -3'
miRNA:   3'- -UGAaUGAGCGGUGG-----------GGGgUGGG--------CGAC- -5'
2773 5' -60.5 NC_001491.2 + 138156 0.69 0.544375
Target:  5'- uGCUUacGCUCGCCucucggcGCCUCCUcgCCGCUGg -3'
miRNA:   3'- -UGAA--UGAGCGG-------UGGGGGGugGGCGAC- -5'
2773 5' -60.5 NC_001491.2 + 118507 0.69 0.497524
Target:  5'- ---aGCcCGCCGCgCCCgACCUGCUGu -3'
miRNA:   3'- ugaaUGaGCGGUGgGGGgUGGGCGAC- -5'
2773 5' -60.5 NC_001491.2 + 86334 0.7 0.451673
Target:  5'- ---gGCgucCGCC-CCCCCCGCCagGCUGg -3'
miRNA:   3'- ugaaUGa--GCGGuGGGGGGUGGg-CGAC- -5'
2773 5' -60.5 NC_001491.2 + 124877 0.71 0.425297
Target:  5'- --gUGCUCaGCUACuCCgCCCugCCGCUGc -3'
miRNA:   3'- ugaAUGAG-CGGUG-GG-GGGugGGCGAC- -5'
2773 5' -60.5 NC_001491.2 + 97567 0.71 0.416711
Target:  5'- gACgUGgUCGCCACCgCCuUCACCCGCa- -3'
miRNA:   3'- -UGaAUgAGCGGUGG-GG-GGUGGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.