Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2773 | 5' | -60.5 | NC_001491.2 | + | 6353 | 0.66 | 0.694017 |
Target: 5'- gACUgGCUCGagcgcaaACCCCCCGacuCCCGCc- -3' miRNA: 3'- -UGAaUGAGCgg-----UGGGGGGU---GGGCGac -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 30008 | 0.66 | 0.723258 |
Target: 5'- ----cCUCGCCAUaCCCCCG-CCGCa- -3' miRNA: 3'- ugaauGAGCGGUG-GGGGGUgGGCGac -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 31287 | 0.66 | 0.703824 |
Target: 5'- ------aCGCUGCCuCCCCGCCCGUc- -3' miRNA: 3'- ugaaugaGCGGUGG-GGGGUGGGCGac -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 32265 | 0.67 | 0.634424 |
Target: 5'- ---aGCUCGCCAgCCUCa--CCGCUGu -3' miRNA: 3'- ugaaUGAGCGGUgGGGGgugGGCGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 43045 | 0.66 | 0.723258 |
Target: 5'- cUUUGCg-GCCGCCgCCCGUCCGCUu -3' miRNA: 3'- uGAAUGagCGGUGGgGGGUGGGCGAc -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 70060 | 0.72 | 0.383452 |
Target: 5'- -gUUACUUGCCGCCUgaCCGgcgcCCCGCUGg -3' miRNA: 3'- ugAAUGAGCGGUGGGg-GGU----GGGCGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 86334 | 0.7 | 0.451673 |
Target: 5'- ---gGCgucCGCC-CCCCCCGCCagGCUGg -3' miRNA: 3'- ugaaUGa--GCGGuGGGGGGUGGg-CGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 97567 | 0.71 | 0.416711 |
Target: 5'- gACgUGgUCGCCACCgCCuUCACCCGCa- -3' miRNA: 3'- -UGaAUgAGCGGUGG-GG-GGUGGGCGac -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 98273 | 0.67 | 0.664332 |
Target: 5'- --gUAC-CGCC-CCCUCUACCCGUUu -3' miRNA: 3'- ugaAUGaGCGGuGGGGGGUGGGCGAc -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 114072 | 0.66 | 0.694017 |
Target: 5'- ---gACUC-CCG-CCUCCAUCCGCUGa -3' miRNA: 3'- ugaaUGAGcGGUgGGGGGUGGGCGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 116854 | 0.67 | 0.624441 |
Target: 5'- gACUcACUCGCCGCCguggccggcuaCCCgGCCCaggccgccGCUGc -3' miRNA: 3'- -UGAaUGAGCGGUGG-----------GGGgUGGG--------CGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 117859 | 0.67 | 0.644405 |
Target: 5'- cGCUgggGC-CGCCACCCCgaagagCugCCGCUc -3' miRNA: 3'- -UGAa--UGaGCGGUGGGGg-----GugGGCGAc -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 118507 | 0.69 | 0.497524 |
Target: 5'- ---aGCcCGCCGCgCCCgACCUGCUGu -3' miRNA: 3'- ugaaUGaGCGGUGgGGGgUGGGCGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 122850 | 0.67 | 0.634424 |
Target: 5'- -aUUGCgCGCgGCCCUCCGCgaGCUGu -3' miRNA: 3'- ugAAUGaGCGgUGGGGGGUGggCGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 124672 | 0.66 | 0.694017 |
Target: 5'- ---cAUUCGCCAagguuCCCCCCGCCauCGCc- -3' miRNA: 3'- ugaaUGAGCGGU-----GGGGGGUGG--GCGac -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 124877 | 0.71 | 0.425297 |
Target: 5'- --gUGCUCaGCUACuCCgCCCugCCGCUGc -3' miRNA: 3'- ugaAUGAG-CGGUG-GG-GGGugGGCGAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 125164 | 0.72 | 0.373029 |
Target: 5'- cGCUcGCUCGCCGCCgcaaugccaacccgCCCCACCuCGUcuUGg -3' miRNA: 3'- -UGAaUGAGCGGUGG--------------GGGGUGG-GCG--AC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 125547 | 0.75 | 0.228237 |
Target: 5'- gGCggcGCUCGCgCGCUCCCgCGCCCGCUc -3' miRNA: 3'- -UGaa-UGAGCG-GUGGGGG-GUGGGCGAc -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 130813 | 0.66 | 0.723258 |
Target: 5'- uCUgagAgUCGCCACCCCCaGCUCuaUGa -3' miRNA: 3'- uGAa--UgAGCGGUGGGGGgUGGGcgAC- -5' |
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2773 | 5' | -60.5 | NC_001491.2 | + | 138156 | 0.69 | 0.544375 |
Target: 5'- uGCUUacGCUCGCCucucggcGCCUCCUcgCCGCUGg -3' miRNA: 3'- -UGAA--UGAGCGG-------UGGGGGGugGGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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