miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2774 5' -48.1 NC_001491.2 + 111180 0.66 0.998829
Target:  5'- --cAGCUAgucGGCGCA--GCGCCAGGc -3'
miRNA:   3'- cuaUCGAUa--UUGCGUgaCGCGGUUUu -5'
2774 5' -48.1 NC_001491.2 + 140112 0.66 0.998568
Target:  5'- --cAGCg--GACGCGCUccggagcgGCGCCGGGc -3'
miRNA:   3'- cuaUCGauaUUGCGUGA--------CGCGGUUUu -5'
2774 5' -48.1 NC_001491.2 + 116405 0.66 0.998568
Target:  5'- --gGGCUccGACGaGCUGCGCCu--- -3'
miRNA:   3'- cuaUCGAuaUUGCgUGACGCGGuuuu -5'
2774 5' -48.1 NC_001491.2 + 109021 0.66 0.998568
Target:  5'- -cUAGCguua--GCGCUaGCGCCAAAGu -3'
miRNA:   3'- cuAUCGauauugCGUGA-CGCGGUUUU- -5'
2774 5' -48.1 NC_001491.2 + 111555 0.66 0.998259
Target:  5'- cAUGGCUGUAACGaggaagagcuCACU-CGCCAGu- -3'
miRNA:   3'- cUAUCGAUAUUGC----------GUGAcGCGGUUuu -5'
2774 5' -48.1 NC_001491.2 + 30872 0.66 0.997471
Target:  5'- --cGGCUAUGGCGCGCgUGUugGUCAGc- -3'
miRNA:   3'- cuaUCGAUAUUGCGUG-ACG--CGGUUuu -5'
2774 5' -48.1 NC_001491.2 + 26567 0.67 0.996978
Target:  5'- ---uGCgGUAAC-CGCUGCGCCAu-- -3'
miRNA:   3'- cuauCGaUAUUGcGUGACGCGGUuuu -5'
2774 5' -48.1 NC_001491.2 + 91391 0.67 0.996978
Target:  5'- gGGUAGCUAgaAACGCACcgGuUGCCAu-- -3'
miRNA:   3'- -CUAUCGAUa-UUGCGUGa-C-GCGGUuuu -5'
2774 5' -48.1 NC_001491.2 + 14237 0.67 0.994142
Target:  5'- uGAUAGgUAaaa-GCGCUGUGCCGAu- -3'
miRNA:   3'- -CUAUCgAUauugCGUGACGCGGUUuu -5'
2774 5' -48.1 NC_001491.2 + 16278 0.67 0.994142
Target:  5'- cGAUAGCUGU-AC-CAg-GCGCCGAGAg -3'
miRNA:   3'- -CUAUCGAUAuUGcGUgaCGCGGUUUU- -5'
2774 5' -48.1 NC_001491.2 + 4830 0.68 0.990847
Target:  5'- --gGGCUGUAGgGaGCgGCGCCGAAAc -3'
miRNA:   3'- cuaUCGAUAUUgCgUGaCGCGGUUUU- -5'
2774 5' -48.1 NC_001491.2 + 99721 0.7 0.971961
Target:  5'- uGAUGGCcaaGAUGCuACUGgGCCAAAAa -3'
miRNA:   3'- -CUAUCGauaUUGCG-UGACgCGGUUUU- -5'
2774 5' -48.1 NC_001491.2 + 106447 0.71 0.957848
Target:  5'- --gGGCgagGACGCGCUGCGaCCGc-- -3'
miRNA:   3'- cuaUCGauaUUGCGUGACGC-GGUuuu -5'
2774 5' -48.1 NC_001491.2 + 146870 0.72 0.939512
Target:  5'- ---cGUUGUAGCGCACcagcgGCGCCAc-- -3'
miRNA:   3'- cuauCGAUAUUGCGUGa----CGCGGUuuu -5'
2774 5' -48.1 NC_001491.2 + 80812 0.72 0.934234
Target:  5'- --cGGCUcuGUAcgGCGUGCUGCGCCAc-- -3'
miRNA:   3'- cuaUCGA--UAU--UGCGUGACGCGGUuuu -5'
2774 5' -48.1 NC_001491.2 + 86166 0.78 0.655159
Target:  5'- --cAGCUcgggGGCGCGCUGCGCCAc-- -3'
miRNA:   3'- cuaUCGAua--UUGCGUGACGCGGUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.