miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2775 3' -60.6 NC_001491.2 + 146436 0.66 0.762146
Target:  5'- aCGCGgaCCGAGGgCGcCGGgg-CCUCGGg -3'
miRNA:   3'- gGUGC--GGCUCCgGC-GCCaaaGGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 117865 0.66 0.762146
Target:  5'- cCCGgcCGCUGGGGCCGCca---CCCCGa -3'
miRNA:   3'- -GGU--GCGGCUCCGGCGccaaaGGGGUc -5'
2775 3' -60.6 NC_001491.2 + 49488 0.66 0.75297
Target:  5'- gCCAUgGCCGuuGCCGcCGGggccgUCCCGGa -3'
miRNA:   3'- -GGUG-CGGCucCGGC-GCCaaa--GGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 147757 0.66 0.743695
Target:  5'- gCGCGCCGucccGGGCCGgGGggccgCUgCAGc -3'
miRNA:   3'- gGUGCGGC----UCCGGCgCCaaa--GGgGUC- -5'
2775 3' -60.6 NC_001491.2 + 70373 0.66 0.73433
Target:  5'- cCCACGCUGuAGGCUGuCGc---CCCCAa -3'
miRNA:   3'- -GGUGCGGC-UCCGGC-GCcaaaGGGGUc -5'
2775 3' -60.6 NC_001491.2 + 114867 0.66 0.715364
Target:  5'- uUCGCgaggGCCGAGGCCGCG--UUCgcgcgccuguaCCCGGa -3'
miRNA:   3'- -GGUG----CGGCUCCGGCGCcaAAG-----------GGGUC- -5'
2775 3' -60.6 NC_001491.2 + 58089 0.66 0.712494
Target:  5'- aCCACuggggguuuggaguGUCGAuGCCGgGGgggugUCCCCGGg -3'
miRNA:   3'- -GGUG--------------CGGCUcCGGCgCCaa---AGGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 33502 0.67 0.695168
Target:  5'- gCAgGCuCGAGGCUGgggaccucaguguCGGUUUCUCCGa -3'
miRNA:   3'- gGUgCG-GCUCCGGC-------------GCCAAAGGGGUc -5'
2775 3' -60.6 NC_001491.2 + 79936 0.67 0.676709
Target:  5'- gCGCGUCGugucccuGGCCGCccacGGcUUCUCCGGg -3'
miRNA:   3'- gGUGCGGCu------CCGGCG----CCaAAGGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 125515 0.67 0.661068
Target:  5'- uCCACgGCCGccGCCGCGacgccgccccgCCCCGGg -3'
miRNA:   3'- -GGUG-CGGCucCGGCGCcaaa-------GGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 1785 0.67 0.657148
Target:  5'- uCCACGcCCGcGGCCGCucug-CCCCGc -3'
miRNA:   3'- -GGUGC-GGCuCCGGCGccaaaGGGGUc -5'
2775 3' -60.6 NC_001491.2 + 114680 0.67 0.647336
Target:  5'- cCCAgGCCGAgGGCCuCGGgUUCcacgaCCCGGa -3'
miRNA:   3'- -GGUgCGGCU-CCGGcGCCaAAG-----GGGUC- -5'
2775 3' -60.6 NC_001491.2 + 116589 0.68 0.627686
Target:  5'- uCCGCGgCGGGGCgucCGCcg--UCCCCGGa -3'
miRNA:   3'- -GGUGCgGCUCCG---GCGccaaAGGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 85259 0.68 0.608048
Target:  5'- gCCGCGCCaGGGCUugGUGGUUgucgaaacCCCCGc -3'
miRNA:   3'- -GGUGCGGcUCCGG--CGCCAAa-------GGGGUc -5'
2775 3' -60.6 NC_001491.2 + 145771 0.68 0.601188
Target:  5'- gCCGcCGCCGGGGCCGauGcugcugcugccgccgCCCCGGu -3'
miRNA:   3'- -GGU-GCGGCUCCGGCgcCaaa------------GGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 136584 0.68 0.598251
Target:  5'- -gGgGCCGAGGgauauaugacuuCCGCGGgg-UCCCAGg -3'
miRNA:   3'- ggUgCGGCUCC------------GGCGCCaaaGGGGUC- -5'
2775 3' -60.6 NC_001491.2 + 5154 0.68 0.598251
Target:  5'- cCCACgcgGCCGAGGCUGCGcggUCUCUg- -3'
miRNA:   3'- -GGUG---CGGCUCCGGCGCcaaAGGGGuc -5'
2775 3' -60.6 NC_001491.2 + 147924 0.68 0.595316
Target:  5'- cUCGCGCCGAGaGCCGCcggggcgggaggccGGgagUCcgCCCAGc -3'
miRNA:   3'- -GGUGCGGCUC-CGGCG--------------CCaa-AG--GGGUC- -5'
2775 3' -60.6 NC_001491.2 + 125108 0.68 0.588477
Target:  5'- gCCGCaGCCGcGGCCGgGGgggCCgCCAa -3'
miRNA:   3'- -GGUG-CGGCuCCGGCgCCaaaGG-GGUc -5'
2775 3' -60.6 NC_001491.2 + 127158 0.68 0.588477
Target:  5'- gCCAgGCCcAGGuCCGCGGgUUCCacaaCGGg -3'
miRNA:   3'- -GGUgCGGcUCC-GGCGCCaAAGGg---GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.