miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2775 5' -51 NC_001491.2 + 137744 0.66 0.988086
Target:  5'- -cCCGGcgGGcgGCGGgcGCCCgCGGg -3'
miRNA:   3'- uaGGUCuaUUuuUGCCuuCGGGgGCU- -5'
2775 5' -51 NC_001491.2 + 45262 0.66 0.986474
Target:  5'- -gCCGGGgccgcGGCGGggGCCgCCGc -3'
miRNA:   3'- uaGGUCUauuu-UUGCCuuCGGgGGCu -5'
2775 5' -51 NC_001491.2 + 45229 0.66 0.986474
Target:  5'- -gCCGGGgccgcGGCGGggGCCgCCGc -3'
miRNA:   3'- uaGGUCUauuu-UUGCCuuCGGgGGCu -5'
2775 5' -51 NC_001491.2 + 45196 0.66 0.986474
Target:  5'- -gCCGGGgccgcGGCGGggGCCgCCGc -3'
miRNA:   3'- uaGGUCUauuu-UUGCCuuCGGgGGCu -5'
2775 5' -51 NC_001491.2 + 45163 0.66 0.986474
Target:  5'- -gCCGGGgccgcGGCGGggGCCgCCGc -3'
miRNA:   3'- uaGGUCUauuu-UUGCCuuCGGgGGCu -5'
2775 5' -51 NC_001491.2 + 45130 0.66 0.986474
Target:  5'- -gCCGGGgccgcGGCGGggGCCgCCGc -3'
miRNA:   3'- uaGGUCUauuu-UUGCCuuCGGgGGCu -5'
2775 5' -51 NC_001491.2 + 3013 0.66 0.986474
Target:  5'- cGUCUAGA--GGAGCaGcAGGCCCCCa- -3'
miRNA:   3'- -UAGGUCUauUUUUGcC-UUCGGGGGcu -5'
2775 5' -51 NC_001491.2 + 57777 0.66 0.985959
Target:  5'- cUCCAGAgucagAAAccgucacgguGACGGucuuggcugugauaAAGCCCCCGu -3'
miRNA:   3'- uAGGUCUa----UUU----------UUGCC--------------UUCGGGGGCu -5'
2775 5' -51 NC_001491.2 + 56016 0.67 0.9847
Target:  5'- -aCCAGGUAcagcGCGGuGGUCUCCGGa -3'
miRNA:   3'- uaGGUCUAUuuu-UGCCuUCGGGGGCU- -5'
2775 5' -51 NC_001491.2 + 42107 0.67 0.9847
Target:  5'- uUCCAGGUGAGGGCGGc--UUCCCGc -3'
miRNA:   3'- uAGGUCUAUUUUUGCCuucGGGGGCu -5'
2775 5' -51 NC_001491.2 + 108055 0.67 0.982753
Target:  5'- -gCCAGGU-GAGACaGGAGCUCCCc- -3'
miRNA:   3'- uaGGUCUAuUUUUGcCUUCGGGGGcu -5'
2775 5' -51 NC_001491.2 + 116050 0.67 0.982753
Target:  5'- -cCCAGAgc--GGCGGAGGCgCCgGGg -3'
miRNA:   3'- uaGGUCUauuuUUGCCUUCGgGGgCU- -5'
2775 5' -51 NC_001491.2 + 146905 0.67 0.980626
Target:  5'- gGUCCAGGccGAGGCccGGGcccgGGCCCCCu- -3'
miRNA:   3'- -UAGGUCUauUUUUG--CCU----UCGGGGGcu -5'
2775 5' -51 NC_001491.2 + 149143 0.67 0.980626
Target:  5'- --gCGGAUGGAGGCGGGAGUCUaggCGGa -3'
miRNA:   3'- uagGUCUAUUUUUGCCUUCGGGg--GCU- -5'
2775 5' -51 NC_001491.2 + 146549 0.67 0.979259
Target:  5'- -cCCuGAgucUGAAGGCGGAcggccugggcgcccuGGUCCCCGGa -3'
miRNA:   3'- uaGGuCU---AUUUUUGCCU---------------UCGGGGGCU- -5'
2775 5' -51 NC_001491.2 + 126052 0.67 0.978309
Target:  5'- cUCUAGAUAGAAACGGGguGGUuuaCCaCGAa -3'
miRNA:   3'- uAGGUCUAUUUUUGCCU--UCGg--GG-GCU- -5'
2775 5' -51 NC_001491.2 + 108333 0.67 0.978309
Target:  5'- cUCCAGAcGAGAuucuCGGuccGCCCCCc- -3'
miRNA:   3'- uAGGUCUaUUUUu---GCCuu-CGGGGGcu -5'
2775 5' -51 NC_001491.2 + 146637 0.67 0.975793
Target:  5'- aGUCCGGGgac-GGCGGAcGCCCCg-- -3'
miRNA:   3'- -UAGGUCUauuuUUGCCUuCGGGGgcu -5'
2775 5' -51 NC_001491.2 + 94721 0.67 0.975793
Target:  5'- --gCGGAgGAAAGCGuaccGGAGCCCUCGAu -3'
miRNA:   3'- uagGUCUaUUUUUGC----CUUCGGGGGCU- -5'
2775 5' -51 NC_001491.2 + 118768 0.67 0.975793
Target:  5'- uUCCAGGguagAGAAGCGGc-GCCCgucguCCGAg -3'
miRNA:   3'- uAGGUCUa---UUUUUGCCuuCGGG-----GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.