miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2777 5' -64.1 NC_001491.2 + 148952 0.66 0.55615
Target:  5'- gGCCUGGG---CCACGCcggggcucGGGCCGggGUGc -3'
miRNA:   3'- -UGGACCCcugGGUGCG--------CCCGGCa-CAC- -5'
2777 5' -64.1 NC_001491.2 + 114568 0.66 0.545721
Target:  5'- cGCCUGcGG-CCgGCGCggcgcugGGGCCGUGg- -3'
miRNA:   3'- -UGGACcCCuGGgUGCG-------CCCGGCACac -5'
2777 5' -64.1 NC_001491.2 + 139976 0.67 0.500123
Target:  5'- cGCCgUGGGGcgguACCUcguggaucucgGCGCGGcGCCG-GUGg -3'
miRNA:   3'- -UGG-ACCCC----UGGG-----------UGCGCC-CGGCaCAC- -5'
2777 5' -64.1 NC_001491.2 + 116327 0.67 0.481994
Target:  5'- cGCCgaGGGGGCCCGgGCccGGGCCu---- -3'
miRNA:   3'- -UGGa-CCCCUGGGUgCG--CCCGGcacac -5'
2777 5' -64.1 NC_001491.2 + 1272 0.67 0.476617
Target:  5'- --aUGGGGGCCaggcucucucucggGCGCGGGcCCGUGa- -3'
miRNA:   3'- uggACCCCUGGg-------------UGCGCCC-GGCACac -5'
2777 5' -64.1 NC_001491.2 + 117526 0.67 0.464189
Target:  5'- gGCCgaGGaGGCCC-CGCagacGGCCGUGUGg -3'
miRNA:   3'- -UGGa-CCcCUGGGuGCGc---CCGGCACAC- -5'
2777 5' -64.1 NC_001491.2 + 112981 0.68 0.424599
Target:  5'- gGCUggGGGGGCCaggcucucucucggGCGCGGGcCCGUGa- -3'
miRNA:   3'- -UGGa-CCCCUGGg-------------UGCGCCC-GGCACac -5'
2777 5' -64.1 NC_001491.2 + 10942 0.68 0.412956
Target:  5'- uGCCUGGGGAUCCAgGCcgaGGGUCu---- -3'
miRNA:   3'- -UGGACCCCUGGGUgCG---CCCGGcacac -5'
2777 5' -64.1 NC_001491.2 + 147510 0.69 0.3808
Target:  5'- gGCCcGGGGAgCCugGUGGcCCGggGUGg -3'
miRNA:   3'- -UGGaCCCCUgGGugCGCCcGGCa-CAC- -5'
2777 5' -64.1 NC_001491.2 + 18974 0.7 0.328693
Target:  5'- uCCggaGGGcgaGACUCGCGaGGGCCGUGUGu -3'
miRNA:   3'- uGGa--CCC---CUGGGUGCgCCCGGCACAC- -5'
2777 5' -64.1 NC_001491.2 + 147744 0.73 0.209568
Target:  5'- gGCCgGGGGGCCgCugcaGCGGGCCGcgaugGUGg -3'
miRNA:   3'- -UGGaCCCCUGG-Gug--CGCCCGGCa----CAC- -5'
2777 5' -64.1 NC_001491.2 + 117319 0.74 0.186267
Target:  5'- gACC-GGGGACUCGCGggaCGGGCUGUGg- -3'
miRNA:   3'- -UGGaCCCCUGGGUGC---GCCCGGCACac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.