Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2777 | 5' | -64.1 | NC_001491.2 | + | 148952 | 0.66 | 0.55615 |
Target: 5'- gGCCUGGG---CCACGCcggggcucGGGCCGggGUGc -3' miRNA: 3'- -UGGACCCcugGGUGCG--------CCCGGCa-CAC- -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 147744 | 0.73 | 0.209568 |
Target: 5'- gGCCgGGGGGCCgCugcaGCGGGCCGcgaugGUGg -3' miRNA: 3'- -UGGaCCCCUGG-Gug--CGCCCGGCa----CAC- -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 18974 | 0.7 | 0.328693 |
Target: 5'- uCCggaGGGcgaGACUCGCGaGGGCCGUGUGu -3' miRNA: 3'- uGGa--CCC---CUGGGUGCgCCCGGCACAC- -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 147510 | 0.69 | 0.3808 |
Target: 5'- gGCCcGGGGAgCCugGUGGcCCGggGUGg -3' miRNA: 3'- -UGGaCCCCUgGGugCGCCcGGCa-CAC- -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 10942 | 0.68 | 0.412956 |
Target: 5'- uGCCUGGGGAUCCAgGCcgaGGGUCu---- -3' miRNA: 3'- -UGGACCCCUGGGUgCG---CCCGGcacac -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 112981 | 0.68 | 0.424599 |
Target: 5'- gGCUggGGGGGCCaggcucucucucggGCGCGGGcCCGUGa- -3' miRNA: 3'- -UGGa-CCCCUGGg-------------UGCGCCC-GGCACac -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 117526 | 0.67 | 0.464189 |
Target: 5'- gGCCgaGGaGGCCC-CGCagacGGCCGUGUGg -3' miRNA: 3'- -UGGa-CCcCUGGGuGCGc---CCGGCACAC- -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 1272 | 0.67 | 0.476617 |
Target: 5'- --aUGGGGGCCaggcucucucucggGCGCGGGcCCGUGa- -3' miRNA: 3'- uggACCCCUGGg-------------UGCGCCC-GGCACac -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 116327 | 0.67 | 0.481994 |
Target: 5'- cGCCgaGGGGGCCCGgGCccGGGCCu---- -3' miRNA: 3'- -UGGa-CCCCUGGGUgCG--CCCGGcacac -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 139976 | 0.67 | 0.500123 |
Target: 5'- cGCCgUGGGGcgguACCUcguggaucucgGCGCGGcGCCG-GUGg -3' miRNA: 3'- -UGG-ACCCC----UGGG-----------UGCGCC-CGGCaCAC- -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 114568 | 0.66 | 0.545721 |
Target: 5'- cGCCUGcGG-CCgGCGCggcgcugGGGCCGUGg- -3' miRNA: 3'- -UGGACcCCuGGgUGCG-------CCCGGCACac -5' |
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2777 | 5' | -64.1 | NC_001491.2 | + | 117319 | 0.74 | 0.186267 |
Target: 5'- gACC-GGGGACUCGCGggaCGGGCUGUGg- -3' miRNA: 3'- -UGGaCCCCUGGGUGC---GCCCGGCACac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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