miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2779 3' -57.6 NC_001491.2 + 97646 0.66 0.876687
Target:  5'- aGCUaGCCGCGCucGCUucaaugccCGCUGggUCCa -3'
miRNA:   3'- -CGAcCGGUGCGc-UGA--------GCGGCuuAGGg -5'
2779 3' -57.6 NC_001491.2 + 116343 0.66 0.86955
Target:  5'- cGCUGG-UGCGCuACaaCGCCGAGggggCCCg -3'
miRNA:   3'- -CGACCgGUGCGcUGa-GCGGCUUa---GGG- -5'
2779 3' -57.6 NC_001491.2 + 140186 0.66 0.86955
Target:  5'- cGC-GGCgCACGCGGuCUCGCUGccgcgcUCCg -3'
miRNA:   3'- -CGaCCG-GUGCGCU-GAGCGGCuu----AGGg -5'
2779 3' -57.6 NC_001491.2 + 146918 0.66 0.86955
Target:  5'- --cGGCCugGgUGACgguccagGCCGAggCCCg -3'
miRNA:   3'- cgaCCGGugC-GCUGag-----CGGCUuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 38118 0.66 0.86955
Target:  5'- --gGGCCugGUGACccacacCGUCGAGUCg- -3'
miRNA:   3'- cgaCCGGugCGCUGa-----GCGGCUUAGgg -5'
2779 3' -57.6 NC_001491.2 + 49493 0.66 0.862208
Target:  5'- gGCcGGCCAuggcCGUuGC-CGCCGGggccGUCCCg -3'
miRNA:   3'- -CGaCCGGU----GCGcUGaGCGGCU----UAGGG- -5'
2779 3' -57.6 NC_001491.2 + 65047 0.66 0.854667
Target:  5'- cGCUGGUCAUGUcaagCGCCauagaaacguggGggUCCCu -3'
miRNA:   3'- -CGACCGGUGCGcugaGCGG------------CuuAGGG- -5'
2779 3' -57.6 NC_001491.2 + 104172 0.66 0.854667
Target:  5'- aGC-GGCCAUGCGcCUguaCGCC---UCCCg -3'
miRNA:   3'- -CGaCCGGUGCGCuGA---GCGGcuuAGGG- -5'
2779 3' -57.6 NC_001491.2 + 14423 0.67 0.839012
Target:  5'- cCUGGCCAaguuaGCGGcCUCGCgGuAGUaCCUg -3'
miRNA:   3'- cGACCGGUg----CGCU-GAGCGgC-UUA-GGG- -5'
2779 3' -57.6 NC_001491.2 + 27503 0.67 0.839012
Target:  5'- --aGGCCucCGCaGAC-CGCCGAggCCUc -3'
miRNA:   3'- cgaCCGGu-GCG-CUGaGCGGCUuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 114936 0.67 0.838209
Target:  5'- cGCUGGCCcCGgGAgcgccacCUCaGCCGcgcGGUCCUc -3'
miRNA:   3'- -CGACCGGuGCgCU-------GAG-CGGC---UUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 67481 0.67 0.822635
Target:  5'- uGCUuGCCGCGC-ACgaCGCCGuagCCCu -3'
miRNA:   3'- -CGAcCGGUGCGcUGa-GCGGCuuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 108084 0.67 0.822635
Target:  5'- aUUGGCCcgGCGUGugUCGUC---UCCCc -3'
miRNA:   3'- cGACCGG--UGCGCugAGCGGcuuAGGG- -5'
2779 3' -57.6 NC_001491.2 + 116227 0.67 0.814193
Target:  5'- uGCUGGCCccAC-CGACUCG----GUCCCa -3'
miRNA:   3'- -CGACCGG--UGcGCUGAGCggcuUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 117506 0.67 0.805594
Target:  5'- --cGGCCGugUGgGACUUGCUGGAcaugaacucaUCCCa -3'
miRNA:   3'- cgaCCGGU--GCgCUGAGCGGCUU----------AGGG- -5'
2779 3' -57.6 NC_001491.2 + 57960 0.67 0.796843
Target:  5'- cGCUGGCCAUGCcggccacccuGGCUCugGCCGcuUCa- -3'
miRNA:   3'- -CGACCGGUGCG----------CUGAG--CGGCuuAGgg -5'
2779 3' -57.6 NC_001491.2 + 34488 0.68 0.778921
Target:  5'- uGCUcGGCCACGCG---CGCCcuggCCCg -3'
miRNA:   3'- -CGA-CCGGUGCGCugaGCGGcuuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 115491 0.68 0.741633
Target:  5'- cCUGGCCAccauCGCGGCcCGCUGcagcggCCCc -3'
miRNA:   3'- cGACCGGU----GCGCUGaGCGGCuua---GGG- -5'
2779 3' -57.6 NC_001491.2 + 140070 0.69 0.722404
Target:  5'- cCUGGCCGCGCGugUacCGCau-GUUCUg -3'
miRNA:   3'- cGACCGGUGCGCugA--GCGgcuUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 140365 0.69 0.722404
Target:  5'- cGCggagGGCCGCGCGcaaucagugCGCCcGAucUCCCg -3'
miRNA:   3'- -CGa---CCGGUGCGCuga------GCGG-CUu-AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.