miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2779 3' -57.6 NC_001491.2 + 148952 0.7 0.673178
Target:  5'- gGCcugGGCCACGCcggGGCUCggGCCGGGgugCUCa -3'
miRNA:   3'- -CGa--CCGGUGCG---CUGAG--CGGCUUa--GGG- -5'
2779 3' -57.6 NC_001491.2 + 85588 0.7 0.663204
Target:  5'- aCUGGCagucccgacuCGCGgGGCUC-CUGggUCCCu -3'
miRNA:   3'- cGACCG----------GUGCgCUGAGcGGCuuAGGG- -5'
2779 3' -57.6 NC_001491.2 + 24056 0.7 0.650201
Target:  5'- cGCUGGCCACucuaGUGGCagccagugucugggUCGCgGGAUCUg -3'
miRNA:   3'- -CGACCGGUG----CGCUG--------------AGCGgCUUAGGg -5'
2779 3' -57.6 NC_001491.2 + 51939 0.7 0.64319
Target:  5'- uGCUGGUUuC-CGAcCUCGCCGAAgaCCCg -3'
miRNA:   3'- -CGACCGGuGcGCU-GAGCGGCUUa-GGG- -5'
2779 3' -57.6 NC_001491.2 + 121451 0.7 0.633166
Target:  5'- cGCUgGGCCAUGCGGCaggaucCGUCGcAcgCCCc -3'
miRNA:   3'- -CGA-CCGGUGCGCUGa-----GCGGC-UuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 115609 0.71 0.603121
Target:  5'- cGC-GGCCcagcgACGCGGCUUGCgCGGccuacuGUCCCc -3'
miRNA:   3'- -CGaCCGG-----UGCGCUGAGCG-GCU------UAGGG- -5'
2779 3' -57.6 NC_001491.2 + 98923 0.71 0.613125
Target:  5'- aGCUcGCCuuCGCGGCUCuGCCGGc-CCCg -3'
miRNA:   3'- -CGAcCGGu-GCGCUGAG-CGGCUuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 117275 0.71 0.613125
Target:  5'- cCUGGCCGCcucGCG-CUaCGCCGAGgcgcaggCCCc -3'
miRNA:   3'- cGACCGGUG---CGCuGA-GCGGCUUa------GGG- -5'
2779 3' -57.6 NC_001491.2 + 146399 0.71 0.623142
Target:  5'- gGCUGGCCGCggcaGCGGCggccuggGCCGggUagCCg -3'
miRNA:   3'- -CGACCGGUG----CGCUGag-----CGGCuuAg-GG- -5'
2779 3' -57.6 NC_001491.2 + 86609 0.72 0.553542
Target:  5'- aGCgGGCCACGCGAgUUuCCGAG-CCg -3'
miRNA:   3'- -CGaCCGGUGCGCUgAGcGGCUUaGGg -5'
2779 3' -57.6 NC_001491.2 + 123739 0.72 0.514769
Target:  5'- gGCgaGGCCugGUGGucuCUCcCCGggUCCCc -3'
miRNA:   3'- -CGa-CCGGugCGCU---GAGcGGCuuAGGG- -5'
2779 3' -57.6 NC_001491.2 + 139771 0.73 0.477145
Target:  5'- cGCUacugGGCCGCGCuacucaacauGGCgggCGCCGAG-CCCg -3'
miRNA:   3'- -CGA----CCGGUGCG----------CUGa--GCGGCUUaGGG- -5'
2779 3' -57.6 NC_001491.2 + 147781 0.73 0.505244
Target:  5'- cGCUGGCCGC-CaGCUCcCCGAagcgcgcgccGUCCCg -3'
miRNA:   3'- -CGACCGGUGcGcUGAGcGGCU----------UAGGG- -5'
2779 3' -57.6 NC_001491.2 + 81494 0.74 0.440932
Target:  5'- --cGGUgGCGCGGCUCggguagGCCGGAUCUCc -3'
miRNA:   3'- cgaCCGgUGCGCUGAG------CGGCUUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 52937 0.78 0.275866
Target:  5'- gGCUGGCCAUGCGAaaggcggugaggGCgCGAAUCCCc -3'
miRNA:   3'- -CGACCGGUGCGCUgag---------CG-GCUUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 148590 0.78 0.260916
Target:  5'- gGUUGGCCGCGCGgugGCUCuGCgCGGcgCCCu -3'
miRNA:   3'- -CGACCGGUGCGC---UGAG-CG-GCUuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 144667 0.79 0.221072
Target:  5'- cGCUGGCUGCGCGGaugagggggucCUCGCCGAAgucguugcUCUCg -3'
miRNA:   3'- -CGACCGGUGCGCU-----------GAGCGGCUU--------AGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.