miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2779 3' -57.6 NC_001491.2 + 115609 0.71 0.603121
Target:  5'- cGC-GGCCcagcgACGCGGCUUGCgCGGccuacuGUCCCc -3'
miRNA:   3'- -CGaCCGG-----UGCGCUGAGCG-GCU------UAGGG- -5'
2779 3' -57.6 NC_001491.2 + 116227 0.67 0.814193
Target:  5'- uGCUGGCCccAC-CGACUCG----GUCCCa -3'
miRNA:   3'- -CGACCGG--UGcGCUGAGCggcuUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 116343 0.66 0.86955
Target:  5'- cGCUGG-UGCGCuACaaCGCCGAGggggCCCg -3'
miRNA:   3'- -CGACCgGUGCGcUGa-GCGGCUUa---GGG- -5'
2779 3' -57.6 NC_001491.2 + 117275 0.71 0.613125
Target:  5'- cCUGGCCGCcucGCG-CUaCGCCGAGgcgcaggCCCc -3'
miRNA:   3'- cGACCGGUG---CGCuGA-GCGGCUUa------GGG- -5'
2779 3' -57.6 NC_001491.2 + 117506 0.67 0.805594
Target:  5'- --cGGCCGugUGgGACUUGCUGGAcaugaacucaUCCCa -3'
miRNA:   3'- cgaCCGGU--GCgCUGAGCGGCUU----------AGGG- -5'
2779 3' -57.6 NC_001491.2 + 121451 0.7 0.633166
Target:  5'- cGCUgGGCCAUGCGGCaggaucCGUCGcAcgCCCc -3'
miRNA:   3'- -CGA-CCGGUGCGCUGa-----GCGGC-UuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 123739 0.72 0.514769
Target:  5'- gGCgaGGCCugGUGGucuCUCcCCGggUCCCc -3'
miRNA:   3'- -CGa-CCGGugCGCU---GAGcGGCuuAGGG- -5'
2779 3' -57.6 NC_001491.2 + 139771 0.73 0.477145
Target:  5'- cGCUacugGGCCGCGCuacucaacauGGCgggCGCCGAG-CCCg -3'
miRNA:   3'- -CGA----CCGGUGCG----------CUGa--GCGGCUUaGGG- -5'
2779 3' -57.6 NC_001491.2 + 140070 0.69 0.722404
Target:  5'- cCUGGCCGCGCGugUacCGCau-GUUCUg -3'
miRNA:   3'- cGACCGGUGCGCugA--GCGgcuUAGGG- -5'
2779 3' -57.6 NC_001491.2 + 140186 0.66 0.86955
Target:  5'- cGC-GGCgCACGCGGuCUCGCUGccgcgcUCCg -3'
miRNA:   3'- -CGaCCG-GUGCGCU-GAGCGGCuu----AGGg -5'
2779 3' -57.6 NC_001491.2 + 140365 0.69 0.722404
Target:  5'- cGCggagGGCCGCGCGcaaucagugCGCCcGAucUCCCg -3'
miRNA:   3'- -CGa---CCGGUGCGCuga------GCGG-CUu-AGGG- -5'
2779 3' -57.6 NC_001491.2 + 144667 0.79 0.221072
Target:  5'- cGCUGGCUGCGCGGaugagggggucCUCGCCGAAgucguugcUCUCg -3'
miRNA:   3'- -CGACCGGUGCGCU-----------GAGCGGCUU--------AGGG- -5'
2779 3' -57.6 NC_001491.2 + 146399 0.71 0.623142
Target:  5'- gGCUGGCCGCggcaGCGGCggccuggGCCGggUagCCg -3'
miRNA:   3'- -CGACCGGUG----CGCUGag-----CGGCuuAg-GG- -5'
2779 3' -57.6 NC_001491.2 + 146918 0.66 0.86955
Target:  5'- --cGGCCugGgUGACgguccagGCCGAggCCCg -3'
miRNA:   3'- cgaCCGGugC-GCUGag-----CGGCUuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 147781 0.73 0.505244
Target:  5'- cGCUGGCCGC-CaGCUCcCCGAagcgcgcgccGUCCCg -3'
miRNA:   3'- -CGACCGGUGcGcUGAGcGGCU----------UAGGG- -5'
2779 3' -57.6 NC_001491.2 + 148590 0.78 0.260916
Target:  5'- gGUUGGCCGCGCGgugGCUCuGCgCGGcgCCCu -3'
miRNA:   3'- -CGACCGGUGCGC---UGAG-CG-GCUuaGGG- -5'
2779 3' -57.6 NC_001491.2 + 148952 0.7 0.673178
Target:  5'- gGCcugGGCCACGCcggGGCUCggGCCGGGgugCUCa -3'
miRNA:   3'- -CGa--CCGGUGCG---CUGAG--CGGCUUa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.