Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2779 | 3' | -57.6 | NC_001491.2 | + | 148952 | 0.7 | 0.673178 |
Target: 5'- gGCcugGGCCACGCcggGGCUCggGCCGGGgugCUCa -3' miRNA: 3'- -CGa--CCGGUGCG---CUGAG--CGGCUUa--GGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 148590 | 0.78 | 0.260916 |
Target: 5'- gGUUGGCCGCGCGgugGCUCuGCgCGGcgCCCu -3' miRNA: 3'- -CGACCGGUGCGC---UGAG-CG-GCUuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 147781 | 0.73 | 0.505244 |
Target: 5'- cGCUGGCCGC-CaGCUCcCCGAagcgcgcgccGUCCCg -3' miRNA: 3'- -CGACCGGUGcGcUGAGcGGCU----------UAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 146918 | 0.66 | 0.86955 |
Target: 5'- --cGGCCugGgUGACgguccagGCCGAggCCCg -3' miRNA: 3'- cgaCCGGugC-GCUGag-----CGGCUuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 146399 | 0.71 | 0.623142 |
Target: 5'- gGCUGGCCGCggcaGCGGCggccuggGCCGggUagCCg -3' miRNA: 3'- -CGACCGGUG----CGCUGag-----CGGCuuAg-GG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 144667 | 0.79 | 0.221072 |
Target: 5'- cGCUGGCUGCGCGGaugagggggucCUCGCCGAAgucguugcUCUCg -3' miRNA: 3'- -CGACCGGUGCGCU-----------GAGCGGCUU--------AGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 140365 | 0.69 | 0.722404 |
Target: 5'- cGCggagGGCCGCGCGcaaucagugCGCCcGAucUCCCg -3' miRNA: 3'- -CGa---CCGGUGCGCuga------GCGG-CUu-AGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 140186 | 0.66 | 0.86955 |
Target: 5'- cGC-GGCgCACGCGGuCUCGCUGccgcgcUCCg -3' miRNA: 3'- -CGaCCG-GUGCGCU-GAGCGGCuu----AGGg -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 140070 | 0.69 | 0.722404 |
Target: 5'- cCUGGCCGCGCGugUacCGCau-GUUCUg -3' miRNA: 3'- cGACCGGUGCGCugA--GCGgcuUAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 139771 | 0.73 | 0.477145 |
Target: 5'- cGCUacugGGCCGCGCuacucaacauGGCgggCGCCGAG-CCCg -3' miRNA: 3'- -CGA----CCGGUGCG----------CUGa--GCGGCUUaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 123739 | 0.72 | 0.514769 |
Target: 5'- gGCgaGGCCugGUGGucuCUCcCCGggUCCCc -3' miRNA: 3'- -CGa-CCGGugCGCU---GAGcGGCuuAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 121451 | 0.7 | 0.633166 |
Target: 5'- cGCUgGGCCAUGCGGCaggaucCGUCGcAcgCCCc -3' miRNA: 3'- -CGA-CCGGUGCGCUGa-----GCGGC-UuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 117506 | 0.67 | 0.805594 |
Target: 5'- --cGGCCGugUGgGACUUGCUGGAcaugaacucaUCCCa -3' miRNA: 3'- cgaCCGGU--GCgCUGAGCGGCUU----------AGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 117275 | 0.71 | 0.613125 |
Target: 5'- cCUGGCCGCcucGCG-CUaCGCCGAGgcgcaggCCCc -3' miRNA: 3'- cGACCGGUG---CGCuGA-GCGGCUUa------GGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 116343 | 0.66 | 0.86955 |
Target: 5'- cGCUGG-UGCGCuACaaCGCCGAGggggCCCg -3' miRNA: 3'- -CGACCgGUGCGcUGa-GCGGCUUa---GGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 116227 | 0.67 | 0.814193 |
Target: 5'- uGCUGGCCccAC-CGACUCG----GUCCCa -3' miRNA: 3'- -CGACCGG--UGcGCUGAGCggcuUAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 115609 | 0.71 | 0.603121 |
Target: 5'- cGC-GGCCcagcgACGCGGCUUGCgCGGccuacuGUCCCc -3' miRNA: 3'- -CGaCCGG-----UGCGCUGAGCG-GCU------UAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 115491 | 0.68 | 0.741633 |
Target: 5'- cCUGGCCAccauCGCGGCcCGCUGcagcggCCCc -3' miRNA: 3'- cGACCGGU----GCGCUGaGCGGCuua---GGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 114936 | 0.67 | 0.838209 |
Target: 5'- cGCUGGCCcCGgGAgcgccacCUCaGCCGcgcGGUCCUc -3' miRNA: 3'- -CGACCGGuGCgCU-------GAG-CGGC---UUAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 108084 | 0.67 | 0.822635 |
Target: 5'- aUUGGCCcgGCGUGugUCGUC---UCCCc -3' miRNA: 3'- cGACCGG--UGCGCugAGCGGcuuAGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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