Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2779 | 3' | -57.6 | NC_001491.2 | + | 116343 | 0.66 | 0.86955 |
Target: 5'- cGCUGG-UGCGCuACaaCGCCGAGggggCCCg -3' miRNA: 3'- -CGACCgGUGCGcUGa-GCGGCUUa---GGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 140186 | 0.66 | 0.86955 |
Target: 5'- cGC-GGCgCACGCGGuCUCGCUGccgcgcUCCg -3' miRNA: 3'- -CGaCCG-GUGCGCU-GAGCGGCuu----AGGg -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 146918 | 0.66 | 0.86955 |
Target: 5'- --cGGCCugGgUGACgguccagGCCGAggCCCg -3' miRNA: 3'- cgaCCGGugC-GCUGag-----CGGCUuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 38118 | 0.66 | 0.86955 |
Target: 5'- --gGGCCugGUGACccacacCGUCGAGUCg- -3' miRNA: 3'- cgaCCGGugCGCUGa-----GCGGCUUAGgg -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 49493 | 0.66 | 0.862208 |
Target: 5'- gGCcGGCCAuggcCGUuGC-CGCCGGggccGUCCCg -3' miRNA: 3'- -CGaCCGGU----GCGcUGaGCGGCU----UAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 65047 | 0.66 | 0.854667 |
Target: 5'- cGCUGGUCAUGUcaagCGCCauagaaacguggGggUCCCu -3' miRNA: 3'- -CGACCGGUGCGcugaGCGG------------CuuAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 104172 | 0.66 | 0.854667 |
Target: 5'- aGC-GGCCAUGCGcCUguaCGCC---UCCCg -3' miRNA: 3'- -CGaCCGGUGCGCuGA---GCGGcuuAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 14423 | 0.67 | 0.839012 |
Target: 5'- cCUGGCCAaguuaGCGGcCUCGCgGuAGUaCCUg -3' miRNA: 3'- cGACCGGUg----CGCU-GAGCGgC-UUA-GGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 27503 | 0.67 | 0.839012 |
Target: 5'- --aGGCCucCGCaGAC-CGCCGAggCCUc -3' miRNA: 3'- cgaCCGGu-GCG-CUGaGCGGCUuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 114936 | 0.67 | 0.838209 |
Target: 5'- cGCUGGCCcCGgGAgcgccacCUCaGCCGcgcGGUCCUc -3' miRNA: 3'- -CGACCGGuGCgCU-------GAG-CGGC---UUAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 67481 | 0.67 | 0.822635 |
Target: 5'- uGCUuGCCGCGC-ACgaCGCCGuagCCCu -3' miRNA: 3'- -CGAcCGGUGCGcUGa-GCGGCuuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 108084 | 0.67 | 0.822635 |
Target: 5'- aUUGGCCcgGCGUGugUCGUC---UCCCc -3' miRNA: 3'- cGACCGG--UGCGCugAGCGGcuuAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 116227 | 0.67 | 0.814193 |
Target: 5'- uGCUGGCCccAC-CGACUCG----GUCCCa -3' miRNA: 3'- -CGACCGG--UGcGCUGAGCggcuUAGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 117506 | 0.67 | 0.805594 |
Target: 5'- --cGGCCGugUGgGACUUGCUGGAcaugaacucaUCCCa -3' miRNA: 3'- cgaCCGGU--GCgCUGAGCGGCUU----------AGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 57960 | 0.67 | 0.796843 |
Target: 5'- cGCUGGCCAUGCcggccacccuGGCUCugGCCGcuUCa- -3' miRNA: 3'- -CGACCGGUGCG----------CUGAG--CGGCuuAGgg -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 34488 | 0.68 | 0.778921 |
Target: 5'- uGCUcGGCCACGCG---CGCCcuggCCCg -3' miRNA: 3'- -CGA-CCGGUGCGCugaGCGGcuuaGGG- -5' |
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2779 | 3' | -57.6 | NC_001491.2 | + | 144667 | 0.79 | 0.221072 |
Target: 5'- cGCUGGCUGCGCGGaugagggggucCUCGCCGAAgucguugcUCUCg -3' miRNA: 3'- -CGACCGGUGCGCU-----------GAGCGGCUU--------AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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