miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2779 5' -55.2 NC_001491.2 + 138721 0.66 0.918548
Target:  5'- uGGGGUg--GGggUCAGGgGaGCuCUGg -3'
miRNA:   3'- gUCCCGaaaCCuuAGUCCgCgUG-GAC- -5'
2779 5' -55.2 NC_001491.2 + 115653 0.66 0.906462
Target:  5'- uCGGGGC---GGAuUCAGGCGCGuuccCCg- -3'
miRNA:   3'- -GUCCCGaaaCCUuAGUCCGCGU----GGac -5'
2779 5' -55.2 NC_001491.2 + 144804 0.66 0.906462
Target:  5'- gCGGGGCUcgGGAGUCGgagacGGCGgagggaugacCACCg- -3'
miRNA:   3'- -GUCCCGAaaCCUUAGU-----CCGC----------GUGGac -5'
2779 5' -55.2 NC_001491.2 + 101703 0.66 0.906462
Target:  5'- aGGGGUUggaggccguggUGGAGcuggcCAGGUGCACCg- -3'
miRNA:   3'- gUCCCGAa----------ACCUUa----GUCCGCGUGGac -5'
2779 5' -55.2 NC_001491.2 + 62461 0.67 0.886512
Target:  5'- aCAGGGCgaaGGAGUCguAGGgguagacggacCGCGCCUc -3'
miRNA:   3'- -GUCCCGaaaCCUUAG--UCC-----------GCGUGGAc -5'
2779 5' -55.2 NC_001491.2 + 147830 0.67 0.848663
Target:  5'- uCGGGGUcg-GGGAUCuGGUGCAUCc- -3'
miRNA:   3'- -GUCCCGaaaCCUUAGuCCGCGUGGac -5'
2779 5' -55.2 NC_001491.2 + 146427 0.67 0.848663
Target:  5'- gAGGGCgccGGGGccUCGGGCuGUugCUGg -3'
miRNA:   3'- gUCCCGaaaCCUU--AGUCCG-CGugGAC- -5'
2779 5' -55.2 NC_001491.2 + 147709 0.68 0.805729
Target:  5'- cCAGGGCcugGGGAUCgaAGGUgaGCGCCg- -3'
miRNA:   3'- -GUCCCGaaaCCUUAG--UCCG--CGUGGac -5'
2779 5' -55.2 NC_001491.2 + 137596 0.69 0.758719
Target:  5'- cCGGGGCg--GGAAUUucccgaAGGCGCGCg-- -3'
miRNA:   3'- -GUCCCGaaaCCUUAG------UCCGCGUGgac -5'
2779 5' -55.2 NC_001491.2 + 96345 0.7 0.708799
Target:  5'- cCAGGGCcgcUGGAGgcgCAGGCagGCGCCc- -3'
miRNA:   3'- -GUCCCGaa-ACCUUa--GUCCG--CGUGGac -5'
2779 5' -55.2 NC_001491.2 + 122877 0.71 0.68829
Target:  5'- uCAGuGGCcg-GGAgAUCGGGCGCACUg- -3'
miRNA:   3'- -GUC-CCGaaaCCU-UAGUCCGCGUGGac -5'
2779 5' -55.2 NC_001491.2 + 86965 0.72 0.613374
Target:  5'- cCAGGGCcUUGGGgcgagucagguagAUCAugaucacGGCGCACUUGg -3'
miRNA:   3'- -GUCCCGaAACCU-------------UAGU-------CCGCGUGGAC- -5'
2779 5' -55.2 NC_001491.2 + 72863 0.73 0.553404
Target:  5'- gAGGcGuCUUUGuGGG-CGGGCGCGCCUGg -3'
miRNA:   3'- gUCC-C-GAAAC-CUUaGUCCGCGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.