miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2780 5' -57 NC_001491.2 + 35965 0.66 0.868893
Target:  5'- uGGCCAGcuGCGUGugGCGUgUGAGCAGa -3'
miRNA:   3'- -CCGGUCccUGUGCugCGCG-ACUUGUU- -5'
2780 5' -57 NC_001491.2 + 137690 0.66 0.853649
Target:  5'- cGGCCguggaccgAGcGGGCGCGggaGCGCGC-GAGCGc -3'
miRNA:   3'- -CCGG--------UC-CCUGUGC---UGCGCGaCUUGUu -5'
2780 5' -57 NC_001491.2 + 144490 0.66 0.845722
Target:  5'- uGGCCgguggcGGGGuucCGCGGCggGCGCUcGGACGAc -3'
miRNA:   3'- -CCGG------UCCCu--GUGCUG--CGCGA-CUUGUU- -5'
2780 5' -57 NC_001491.2 + 148387 0.66 0.843306
Target:  5'- aGCCucAGGGGCGCagaguccggguacaGGCGCGC-GAACGc -3'
miRNA:   3'- cCGG--UCCCUGUG--------------CUGCGCGaCUUGUu -5'
2780 5' -57 NC_001491.2 + 43675 0.66 0.835129
Target:  5'- uGCUGGGGucgagcacuauaagACACGGCGgCGCUGGAg-- -3'
miRNA:   3'- cCGGUCCC--------------UGUGCUGC-GCGACUUguu -5'
2780 5' -57 NC_001491.2 + 116646 0.67 0.812149
Target:  5'- aGCuCGGGGACGCcuGCGUGCUGGc--- -3'
miRNA:   3'- cCG-GUCCCUGUGc-UGCGCGACUuguu -5'
2780 5' -57 NC_001491.2 + 145389 0.67 0.812149
Target:  5'- cGCCGGGGGaaGCGGCGC-CgGAGCGg -3'
miRNA:   3'- cCGGUCCCUg-UGCUGCGcGaCUUGUu -5'
2780 5' -57 NC_001491.2 + 117321 0.67 0.812149
Target:  5'- gGGaCCGGGGACucgcGgGACGgGCUGugGGCGAc -3'
miRNA:   3'- -CC-GGUCCCUG----UgCUGCgCGAC--UUGUU- -5'
2780 5' -57 NC_001491.2 + 5148 0.67 0.793443
Target:  5'- cGGCCGaGGcugcgcggucucuGCGCGACGCGgUGAuGCGAg -3'
miRNA:   3'- -CCGGUcCC-------------UGUGCUGCGCgACU-UGUU- -5'
2780 5' -57 NC_001491.2 + 86165 0.69 0.708044
Target:  5'- aGCuCGGGGGCGCGcuGCGCcacGCUGAugAu -3'
miRNA:   3'- cCG-GUCCCUGUGC--UGCG---CGACUugUu -5'
2780 5' -57 NC_001491.2 + 55019 0.69 0.708044
Target:  5'- uGGCuCAGaG-UACGACGUGCUGAACu- -3'
miRNA:   3'- -CCG-GUCcCuGUGCUGCGCGACUUGuu -5'
2780 5' -57 NC_001491.2 + 115456 0.69 0.708044
Target:  5'- cGGCCcGGGACgGCG-CGCGCUucgggGAGCu- -3'
miRNA:   3'- -CCGGuCCCUG-UGCuGCGCGA-----CUUGuu -5'
2780 5' -57 NC_001491.2 + 32080 0.69 0.69801
Target:  5'- cGCCgggAGGGAgugagggugUACGugGCGgUGAGCAAg -3'
miRNA:   3'- cCGG---UCCCU---------GUGCugCGCgACUUGUU- -5'
2780 5' -57 NC_001491.2 + 144891 0.69 0.687921
Target:  5'- uGCCGGGGACGC--CG-GCUGGGCGg -3'
miRNA:   3'- cCGGUCCCUGUGcuGCgCGACUUGUu -5'
2780 5' -57 NC_001491.2 + 91667 0.7 0.667612
Target:  5'- uGGCCAGGGACAU--UGUuuUGGACAGa -3'
miRNA:   3'- -CCGGUCCCUGUGcuGCGcgACUUGUU- -5'
2780 5' -57 NC_001491.2 + 37686 0.7 0.65741
Target:  5'- aGGCguccaCGGGGGC-CGACGCcGCUuGGGCAAg -3'
miRNA:   3'- -CCG-----GUCCCUGuGCUGCG-CGA-CUUGUU- -5'
2780 5' -57 NC_001491.2 + 144707 0.7 0.65741
Target:  5'- aGGUC-GGG-CGCGGCGgGCUGggUGAa -3'
miRNA:   3'- -CCGGuCCCuGUGCUGCgCGACuuGUU- -5'
2780 5' -57 NC_001491.2 + 3045 0.7 0.636954
Target:  5'- cGGCCAGGGcggcgaGCGACG-GC-GAGCGAu -3'
miRNA:   3'- -CCGGUCCCug----UGCUGCgCGaCUUGUU- -5'
2780 5' -57 NC_001491.2 + 49469 0.7 0.636954
Target:  5'- gGGCCGucccGGACGCGGCGCaGCgggGAACc- -3'
miRNA:   3'- -CCGGUc---CCUGUGCUGCG-CGa--CUUGuu -5'
2780 5' -57 NC_001491.2 + 919 0.71 0.585882
Target:  5'- uGCCGGGGGUugGuagguauuGgGCGCUGAACAAa -3'
miRNA:   3'- cCGGUCCCUGugC--------UgCGCGACUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.