Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 116058 | 0.66 | 0.975211 |
|
Target: 5'- cCAGcacUCCCAGAGCGgCGgagGCgccgggGCu -3' miRNA: 3'- uGUCaa-AGGGUCUCGCgGCaa-UGa-----CG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 146435 | 0.66 | 0.972479 |
|
Target: 5'- cGCGGa--CCgAGGGCGCCGgggccucggGCUGUu -3' miRNA: 3'- -UGUCaaaGGgUCUCGCGGCaa-------UGACG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 74406 | 0.67 | 0.962991 |
|
Target: 5'- -uGGUUgauuggCCCAGAGCuCCGUUcgcacaAUUGCu -3' miRNA: 3'- ugUCAAa-----GGGUCUCGcGGCAA------UGACG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 147985 | 0.67 | 0.955523 |
|
Target: 5'- uGCGGUUcCCCAGGGCcGCCa--GCaGCg -3' miRNA: 3'- -UGUCAAaGGGUCUCG-CGGcaaUGaCG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 116364 | 0.69 | 0.927243 |
|
Target: 5'- -uGGUggCCCGGAccgugGCGCCGcUGgUGCg -3' miRNA: 3'- ugUCAaaGGGUCU-----CGCGGCaAUgACG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 146218 | 0.69 | 0.921646 |
|
Target: 5'- gGCAGgg-CCCAGAGCG-CGUUcccgGCcGCc -3' miRNA: 3'- -UGUCaaaGGGUCUCGCgGCAA----UGaCG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 70674 | 0.69 | 0.915796 |
|
Target: 5'- -----cUCCCGGAGCGCaaaaaGUUGCUaGUa -3' miRNA: 3'- ugucaaAGGGUCUCGCGg----CAAUGA-CG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 146019 | 0.71 | 0.8181 |
|
Target: 5'- uGCGGa---CCAGAGCGuuG-UACUGCu -3' miRNA: 3'- -UGUCaaagGGUCUCGCggCaAUGACG- -5' |
|||||||
| 2782 | 3' | -52.3 | NC_001491.2 | + | 147376 | 0.74 | 0.690815 |
|
Target: 5'- cCAGgggCUCGGAGCGCCGcUUGCcGCu -3' miRNA: 3'- uGUCaaaGGGUCUCGCGGC-AAUGaCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home