miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2782 5' -57.3 NC_001491.2 + 45721 0.66 0.83618
Target:  5'- uGCAUcAGAacGGCCGCuugaggGGUCGUCGguGGGAg -3'
miRNA:   3'- -UGUA-UCU--UCGGCG------CCAGCGGC--UCCUa -5'
2782 5' -57.3 NC_001491.2 + 116352 0.66 0.819312
Target:  5'- cCGUGGc-GCCGCuGGUgcgcuacaaCGCCGAGGGg -3'
miRNA:   3'- uGUAUCuuCGGCG-CCA---------GCGGCUCCUa -5'
2782 5' -57.3 NC_001491.2 + 121350 0.69 0.696164
Target:  5'- aGC-UGGGcugGGCCGgGGUCGCCGgagcuGGGGUu -3'
miRNA:   3'- -UGuAUCU---UCGGCgCCAGCGGC-----UCCUA- -5'
2782 5' -57.3 NC_001491.2 + 129818 0.69 0.696164
Target:  5'- -gGUGGuAGCCGCGGUgGUugcaGAGGAa -3'
miRNA:   3'- ugUAUCuUCGGCGCCAgCGg---CUCCUa -5'
2782 5' -57.3 NC_001491.2 + 102085 0.69 0.686059
Target:  5'- cACcUAGAcAGCCGUGGUgugagCGCgGAGGAa -3'
miRNA:   3'- -UGuAUCU-UCGGCGCCA-----GCGgCUCCUa -5'
2782 5' -57.3 NC_001491.2 + 56663 0.69 0.665722
Target:  5'- gACAgucuAGCCGCGuacgCGCCGAGGGc -3'
miRNA:   3'- -UGUaucuUCGGCGCca--GCGGCUCCUa -5'
2782 5' -57.3 NC_001491.2 + 144288 0.69 0.655509
Target:  5'- ---cAGAAGCCGCccgGGUCuGCcCGGGGAa -3'
miRNA:   3'- uguaUCUUCGGCG---CCAG-CG-GCUCCUa -5'
2782 5' -57.3 NC_001491.2 + 147332 0.7 0.635034
Target:  5'- cCGUGGAuGGCa-CGGUCGuCCGAGGAg -3'
miRNA:   3'- uGUAUCU-UCGgcGCCAGC-GGCUCCUa -5'
2782 5' -57.3 NC_001491.2 + 145409 0.7 0.624789
Target:  5'- aGCu--GGAGCCggaGCGGgugCGCCGGGGGa -3'
miRNA:   3'- -UGuauCUUCGG---CGCCa--GCGGCUCCUa -5'
2782 5' -57.3 NC_001491.2 + 121400 0.75 0.362022
Target:  5'- gGCAUGGcuGGGCCGgGGUCGCCGGagcuGGGc -3'
miRNA:   3'- -UGUAUC--UUCGGCgCCAGCGGCU----CCUa -5'
2782 5' -57.3 NC_001491.2 + 129500 0.77 0.268698
Target:  5'- -uGUGGGAGCCGCGGUCGuuGuuguuGGGGUc -3'
miRNA:   3'- ugUAUCUUCGGCGCCAGCggC-----UCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.